RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HCFC2Q9Y5Z7 792 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SPTBN5Q9NRC6 3674 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 YKT6O15498 198 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HYAL3O43820 417 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SOCS5O75159 536 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HPP00738 406 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HIST1H2ABP04908 130 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TYRP1P17643 537 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 POU3F2P20265 443 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SHC1P29353 583 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HNF1BP35680 557 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TRIM23P36406 574 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TSPAN31Q12999 210 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CDKN3Q16667 212 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ATXN7L2Q5T6C5 722 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 TNFAIP8L2Q6P589 184 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ZC3H14Q6PJT7 736 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 AGTRAPQ6RW13 159 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 GLDNQ6ZMI3 551 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 Q6ZTK2 550 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HIST3H2AQ7L7L0 130 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 RBM45Q8IUH3 476 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 ZNF461Q8TAF7 563 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 NSMAFQ92636 917 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 OSTF1Q92882 214 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 HIST1H2ACQ93077 130 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 MED8Q96G25 268 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PPP1R16AQ96I34 528 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 C10orf90Q96M02 699 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 SEPT5Q99719 369 aaPredicted RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 GAREM1Q9H706 876 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 BRD9Q9H8M2 597 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 BEX1Q9HBH7 125 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 NEUROD4Q9HD90 331 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 CYB5R1Q9UHQ9 305 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PLCL2Q9UPR0 1127 aa10.11□□□□□ -0.79
UPF3A-212ENST00000619079 PRRC2BQ5JSZ5 2229 aaKnown RBP10.11□□□□□ -0.79
UPF3A-212ENST00000619079 REV3LO60673 3130 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 COL6A3P12111 3177 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 OR2M5A3KFT3 312 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 FAM74A7A6NL05 159 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 REM1O75628 298 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ANKRD34CP0C6C1 535 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ZDHHC11BP0C7U3 371 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ACP5P13686 325 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 EPCAMP16422 314 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ATP5C1P36542 298 aaKnown RBP10.1□□□□□ -0.79
UPF3A-212ENST00000619079 GDNFP39905 211 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CAPZA2P47755 286 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 VEGFCP49767 419 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 RAB13P51153 203 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 TAS2R43P59537 309 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 TAS2R50P59544 299 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 GMFBP60983 142 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 B4GALNT1Q00973 533 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 MC1RQ01726 317 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 PLD1Q13393 1074 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 NAE1Q13564 534 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 RAB33AQ14088 237 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 LTB4RQ15722 352 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 FAM74A3Q4VXF1 159 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 IGSF11Q5DX21 431 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ZDHHC20Q5W0Z9 365 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 VRK3Q8IV63 474 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CCDC36Q8IYA8 594 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 TBC1D19Q8N5T2 526 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ACBD7Q8N6N7 88 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 TEX19Q8NA77 164 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ATAD1Q8NBU5 361 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 OR4D11Q8NGI4 311 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 OR4D10Q8NGI6 311 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 OR51Q1Q8NH59 317 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ORAI1Q96D31 301 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CMTM3Q96MX0 182 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CAMK1GQ96NX5 476 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CDCA3Q99618 268 aaPredicted RBP10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ARL6Q9H0F7 186 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CXorf36Q9H7Y0 433 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 PLEKHA1Q9HB21 404 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 MAN2C1Q9NTJ4 1040 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 CLDND1Q9NY35 253 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 DPP7Q9UHL4 492 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 FBXL3Q9UKT7 428 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 ENTPD4Q9Y227 616 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 VWA8A3KMH1 1905 aa10.1□□□□□ -0.79
UPF3A-212ENST00000619079 A0A0G2JK05 382 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 ANHXE9PGG2 379 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 PRAMEF2O60811 474 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 IFNA4P05014 189 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 IL5P05113 134 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 PPP2R1BP30154 601 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 CCR8P51685 355 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 MC2RQ01718 297 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 HYAL1Q12794 435 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 RNASE12Q5GAN4 147 aaKnown RBP10.09□□□□□ -0.79
UPF3A-212ENST00000619079 SFRP5Q5T4F7 317 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 TRMT11Q7Z4G4 463 aaKnown RBP10.09□□□□□ -0.79
UPF3A-212ENST00000619079 PAQR7Q86WK9 346 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 KREMEN2Q8NCW0 462 aa10.09□□□□□ -0.79
UPF3A-212ENST00000619079 PXT1Q8NFP0 134 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms