RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PRPF19Q9UMS4 504 aaKnown RBP17.96■□□□□ 0.47
UPF3A-211ENST00000618700 SLC35A3Q9Y2D2 325 aa17.96■□□□□ 0.47
UPF3A-211ENST00000618700 EBAG9O00559 213 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 ATP5HO75947 161 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 MFN2O95140 757 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 IL7RP16871 459 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 KCNJ10P78508 379 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 PLGLB1Q02325 96 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF117Q03924 483 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 NDUFAF6Q330K2 333 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF324BQ6AW86 544 aaPredicted RBP17.95■□□□□ 0.46
UPF3A-211ENST00000618700 DHRS4L2Q6PKH6 230 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 FAM180AQ6UWF9 173 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF836Q6ZNA1 936 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 EIF3MQ7L2H7 374 aaKnown RBP17.95■□□□□ 0.46
UPF3A-211ENST00000618700 SLC22A16Q86VW1 577 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 RNF148Q8N7C7 305 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 OR2M3Q8NG83 312 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 SNRNP40Q96DI7 357 aaKnown RBP17.95■□□□□ 0.46
UPF3A-211ENST00000618700 GNRHR2Q96P88 292 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 BARD1Q99728 777 aaKnown RBP17.95■□□□□ 0.46
UPF3A-211ENST00000618700 SPATA5L1Q9BVQ7 753 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 ZDHHC11Q9H8X9 412 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 CHST2Q9Y4C5 530 aa17.95■□□□□ 0.46
UPF3A-211ENST00000618700 FAM166BA8MTA8 275 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 ACOT7O00154 380 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 GYG2O15488 501 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF264O43296 627 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 EIF4E2O60573 245 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CSTAP01040 98 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CRYABP02511 175 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 PRKAR1BP31321 381 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 PPIAP62937 165 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 SKP2Q13309 424 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 LARS2Q15031 903 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF311Q5JNZ3 666 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 MRPL2Q5T653 305 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CBLN3Q6UW01 205 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF843Q8N446 348 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 FAM109AQ8N4B1 249 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CISD2Q8N5K1 135 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 FAM156AQ8NDB6 213 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 TNIP2Q8NFZ5 429 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 OR4K17Q8NGC6 315 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 TAMM41Q96BW9 452 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 KLHDC3Q9BQ90 382 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 BTBD10Q9BSF8 475 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 LAT2Q9GZY6 243 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CACYBPQ9HB71 228 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 EXOSC3Q9NQT5 275 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 QPCTLQ9NXS2 382 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 DNAJB12Q9NXW2 375 aaKnown RBP17.94■□□□□ 0.46
UPF3A-211ENST00000618700 MED11Q9P086 117 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 B4GALT7Q9UBV7 327 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 ICAM5Q9UMF0 924 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CARD8Q9Y2G2 431 aa17.94■□□□□ 0.46
UPF3A-211ENST00000618700 CDHR4A6H8M9 788 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 M0QX08 132 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 GTPBP1O00178 669 aaKnown RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 CXCR6O00574 342 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 TFECO14948 347 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 HCRTR2O43614 444 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 SERPINB7O75635 380 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 CBR3O75828 277 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 EPPINO95925 133 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 OPN1SWP03999 348 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 UBTFL6P0CB48 400 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 GGT1P19440 569 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 MSX1P28360 303 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 KDELR2P33947 212 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 MAGEA5P43359 124 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 RASSF2P50749 326 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 SUMO3P55854 103 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 DMTNQ08495 405 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 ZSWIM7Q19AV6 140 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 COMTD1Q86VU5 262 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 ARMC8Q8IUR7 673 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 GRAMD2AQ8IUY3 354 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 TOR1AIP2Q8NFQ8 470 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 B4GALNT2Q8NHY0 566 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 NR4A3Q92570 626 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 CNOT9Q92600 299 aaKnown RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 C1GALT1C1Q96EU7 318 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 SH3YL1Q96HL8 342 aaPredicted RBP17.93■□□□□ 0.46
UPF3A-211ENST00000618700 DSN1Q9H410 356 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 SEC14L3Q9UDX4 400 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 ZNF232Q9UNY5 417 aa17.93■□□□□ 0.46
UPF3A-211ENST00000618700 NCKAP5O14513 1909 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 SUV39H1O43463 412 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 TCN1P20061 433 aaPredicted RBP17.92■□□□□ 0.46
UPF3A-211ENST00000618700 CD247P20963 164 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 MST1P26927 711 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 GDF1P27539 372 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 P2RX1P51575 399 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 NCALDP61601 193 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 ALDH6A1Q02252 535 aaKnown RBP17.92■□□□□ 0.46
UPF3A-211ENST00000618700 EIPR1Q53HC9 387 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 CMPK2Q5EBM0 449 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 CCDC121Q6ZUS5 278 aa17.92■□□□□ 0.46
UPF3A-211ENST00000618700 CLIP4Q8N3C7 705 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms