RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 URB1O60287 2271 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 ARRDC5A6NEK1 342 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 ANXA2P2A6NMY6 339 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 PROS1P07225 676 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 ANXA2P07355 339 aaKnown RBP11.77□□□□□ -0.52
LIG1-221ENST00000613670 ADH7P40394 386 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 DGCR2P98153 550 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 BTN1A1Q13410 526 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 TOR2AQ5JU69 321 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 GARNL3Q5VVW2 1013 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 C1orf94Q6P1W5 598 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 ADIPOR2Q86V24 386 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 OR8D4Q8NGM9 314 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 LRIG1Q96JA1 1093 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 HS6ST2Q96MM7 605 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 NUBP2Q9Y5Y2 271 aa11.77□□□□□ -0.52
LIG1-221ENST00000613670 ARPC5O15511 151 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 SOX30O94993 753 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 IFNA16P05015 189 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 BSGP35613 385 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.77□□□□□ -0.531e-7■■□□□ 12.5
LIG1-221ENST00000613670 MEPCEQ7L2J0 689 aaKnown RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 KANSL1Q7Z3B3 1105 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 ZNF527Q8NB42 609 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 SDR9C7Q8NEX9 313 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 OR8S1Q8NH09 359 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 SMPDL3BQ92485 455 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 SRMSQ9H3Y6 488 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 SLC23A2Q9UGH3 650 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 GABRA3P34903 492 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 RAB28P51157 221 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 PDX1P52945 283 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 HCCSP53701 268 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 PSMD4P55036 377 aaKnown RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 TAS2R43P59537 309 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 ATXN7L3Q14CW9 347 aaPredicted RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 ZNF628Q5EBL2 1059 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 TMEM69Q5SWH9 247 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 ZNF782Q6ZMW2 699 aaPredicted RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 TMED4Q7Z7H5 227 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 NRROSQ86YC3 692 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 OR4K14Q8NGD5 310 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 OR5M3Q8NGP4 307 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 ABHD4Q8TB40 342 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 FCRL1Q96LA6 429 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 DCLRE1CQ96SD1 692 aaKnown RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 ACTRT3Q9BYD9 372 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 PELI2Q9HAT8 420 aa11.77□□□□□ -0.53
LIG1-221ENST00000613670 LSM2Q9Y333 95 aaKnown RBP11.77□□□□□ -0.53
LIG1-221ENST00000613670 EDDM13A0A1B0GTR0 161 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 BLOC1S5-TXNDC5H3BN57 136 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 CACNB4O00305 520 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 APOC3P02656 99 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 AK4P27144 223 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 TEAD1P28347 426 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 MNDAP41218 407 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ELAVL3Q14576 367 aaKnown RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 PUS10Q3MIT2 529 aaKnown RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 AKIRIN2Q53H80 203 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ARMC6Q6NXE6 501 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 GDF7Q7Z4P5 450 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 TMEFF1Q8IYR6 380 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 TMEM239Q8WW34 195 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ARRDC3Q96B67 414 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ORAI1Q96D31 301 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 FZD3Q9NPG1 666 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 POLHQ9Y253 713 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 GPR55Q9Y2T6 319 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 CACNA1IQ9P0X4 2223 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 TRAPPC13A5PLN9 417 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ZNF879B4DU55 563 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 B3GALT2O43825 422 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 OR6A2O95222 327 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 PKLRP30613 574 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 HTR1FP30939 366 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 SEC13P55735 322 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 CRMP1Q14194 572 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ZNF676Q8N7Q3 588 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 C12orf76Q8N812 135 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 THAP4Q8WY91 577 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 S100A16Q96FQ6 103 aaKnown RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.76□□□□□ -0.53
LIG1-221ENST00000613670 B3GNT2Q9NY97 397 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 URADA6NGE7 173 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 EEF1A2Q05639 463 aaKnown RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 GALEQ14376 348 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 TMEM201Q5SNT2 666 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 ZNF770Q6IQ21 691 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 GPR155Q7Z3F1 870 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 LRRC56Q8IYG6 542 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 SLC38A6Q8IZM9 456 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 LRRC25Q8N386 305 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 OR4Q3Q8NH05 313 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 NARFLQ9H6Q4 476 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 MTHFD2LQ9H903 347 aaPredicted RBP11.76□□□□□ -0.53
LIG1-221ENST00000613670 FLVCR2Q9UPI3 526 aa11.76□□□□□ -0.53
LIG1-221ENST00000613670 LOC100509620A0A075B734 347 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 CDHR4A6H8M9 788 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 ACOD1A6NK06 481 aa11.75□□□□□ -0.53
LIG1-221ENST00000613670 NPIPB8E9PQR5 432 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms