RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 MTERF3Q96E29 417 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 KLHL15Q96M94 604 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 TRMOQ9BU70 441 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 BTBD2Q9BX70 525 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 PPCSQ9HAB8 311 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 SIRT3Q9NTG7 399 aaPredicted RBP11.75□□□□□ -0.53
RPS28-204ENST00000602140 GIN1Q9NXP7 522 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 MID2Q9UJV3 735 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 GPR52Q9Y2T5 361 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 SNX8Q9Y5X2 465 aa11.75□□□□□ -0.53
RPS28-204ENST00000602140 FN1P02751 2386 aaKnown RBP11.75□□□□□ -0.53
RPS28-204ENST00000602140 DSCAMO60469 2012 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 HSPA4LO95757 839 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 NUDT14O95848 222 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 HMGN2P05204 90 aaKnown RBP11.74□□□□□ -0.53
RPS28-204ENST00000602140 CHRNGP07510 517 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 LINGO3P0C6S8 592 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 PSMB1P20618 241 aaKnown RBP11.74□□□□□ -0.53
RPS28-204ENST00000602140 ATP6V1C1P21283 382 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 HPCAL1P37235 193 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 RNF144AP50876 292 aaPredicted RBP11.74□□□□□ -0.53
RPS28-204ENST00000602140 ZNF117Q03924 483 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 FOXF1Q12946 379 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 MLC1Q15049 377 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 UGT3A2Q3SY77 523 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 LRIG3Q6UXM1 1119 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 LRRN4CLQ8ND94 238 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 OR7A2PQ8NGA2 310 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 ABHD3Q8WU67 409 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 TWIST2Q8WVJ9 160 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 REXO5Q96IC2 774 aaKnown RBP11.74□□□□□ -0.53
RPS28-204ENST00000602140 STACQ99469 402 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 OR10A4Q9H209 315 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 PIGUQ9H490 435 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 DUSP22Q9NRW4 184 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 ATP6V1HQ9UI12 483 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 TRAF6Q9Y4K3 522 aa11.74□□□□□ -0.53
RPS28-204ENST00000602140 ZANQ9Y493 2812 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 NPIPA5A0A0B4J1W7 369 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 TMEM114B3SHH9 223 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 NPIPA7E9PJI5 369 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 HS3ST1O14792 307 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 PIP5K1BO14986 540 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 SCAMP2O15127 329 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 OIP5O43482 229 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 EFNA2O43921 213 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 FGF4P08620 206 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 PABPC4LP0CB38 370 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 NPIPA8P0DM63 369 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 LAMP1P11279 417 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 DDX5P17844 614 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 ELK4P28324 431 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 ALDH3A1P30838 453 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 EIF1P41567 113 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 ZNF844Q08AG5 666 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 ZNF239Q16600 458 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 ARL13AQ5H913 290 aaPredicted RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 TMEM201Q5SNT2 666 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 CDC73Q6P1J9 531 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 CBLN3Q6UW01 205 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 NUFIP2Q7Z417 695 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 MTERF4Q7Z6M4 381 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 HEATR5AQ86XA9 2040 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 ZNF611Q8N823 705 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 EIF1ADQ8N9N8 165 aaKnown RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 FBXO27Q8NI29 283 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 AGR3Q8TD06 166 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 RNF128Q8TEB7 428 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 CPNE4Q96A23 557 aaPredicted RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 TMEM204Q9BSN7 226 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 SRXN1Q9BYN0 137 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 CXorf56Q9H5V9 222 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 TIGARQ9NQ88 270 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 ZNF701Q9NV72 531 aaPredicted RBP11.73□□□□□ -0.53
RPS28-204ENST00000602140 GIMAP2Q9UG22 337 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 CARD8Q9Y2G2 431 aa11.73□□□□□ -0.53
RPS28-204ENST00000602140 TLDC2A0PJX2 215 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 ZNF195O14628 629 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 NPHS1O60500 1241 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 PEX11AO75192 247 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 NTN1O95631 604 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 NID1P14543 1247 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 PAX1P15863 534 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 ADH6P28332 368 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 MAPK1P28482 360 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 RPL3P39023 403 aaKnown RBP11.72□□□□□ -0.53
RPS28-204ENST00000602140 CCT3P49368 545 aaKnown RBP11.72□□□□□ -0.53
RPS28-204ENST00000602140 P2RX1P51575 399 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 ATP5J2P56134 94 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 TP53BP2Q13625 1128 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 RNPS1Q15287 305 aaKnown RBP11.72□□□□□ -0.53
RPS28-204ENST00000602140 TSC22D1Q15714 1073 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 NDUFAF6Q330K2 333 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 TMEM176BQ3YBM2 270 aaPredicted RBP11.72□□□□□ -0.53
RPS28-204ENST00000602140 KLHL26Q53HC5 615 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 DCST2Q5T1A1 773 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 PRIMA1Q86XR5 153 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 HOMEZQ8IX15 550 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 TUSC5Q8IXB3 177 aa11.72□□□□□ -0.53
RPS28-204ENST00000602140 ZNF527Q8NB42 609 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms