RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 UBL4AP11441 157 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 ZNF708P17019 499 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 P2RX1P51575 399 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 TPD52P55327 224 aaPredicted RBP13.75□□□□□ -0.21
LIG1-219ENST00000600055 DSTNP60981 165 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 HPCAP84074 193 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 RGNQ15493 299 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 TOMM34Q15785 309 aaPredicted RBP13.75□□□□□ -0.21
LIG1-219ENST00000600055 TMEM44Q2T9K0 475 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 PLPPR5Q32ZL2 321 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 GLYR1Q49A26 553 aaPredicted RBP13.75□□□□□ -0.21
LIG1-219ENST00000600055 AP1ARQ63HQ0 302 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 XKRXQ6PP77 449 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 DLEU7Q6UYE1 221 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 LRRC74BQ6ZQY2 392 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 RETREG3Q86VR2 466 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 C10orf111Q8N326 155 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 POC1BQ8TC44 478 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 TRIB1Q96RU8 372 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 PIGQQ9BRB3 760 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 HHATLQ9HCP6 504 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 SAR1AQ9NR31 198 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 LEF1Q9UJU2 399 aaPredicted RBP13.75□□□□□ -0.21
LIG1-219ENST00000600055 LIPT1Q9Y234 373 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 RNF6Q9Y252 685 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 L3MBTL1Q9Y468 752 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 PCNX3Q9H6A9 2034 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 A0A087WZY1 265 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 A0A0G2JNJ9 132 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 H0Y3Z8 333 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 H3BML4 177 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 ZNF264O43296 627 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 CYP7B1O75881 506 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 TOXO94900 526 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 NUDT14O95848 222 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 EPPINO95925 133 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 CSTAP01040 98 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 BCHEP06276 602 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 SNRPB2P08579 225 aaKnown RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 TFPTP0C1Z6 253 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 LINGO3P0C6S8 592 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 POU3F2P20265 443 aaPredicted RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 GRNP28799 593 aaKnown RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 PTGER4P35408 488 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 ZNF41P51814 821 aaPredicted RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 SUCLG1P53597 346 aaKnown RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 SEC24CP53992 1094 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 CLDN15P56746 228 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 SKP2Q13309 424 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 FGFBP1Q14512 234 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 RPS26P11Q5JNZ5 115 aaPredicted RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 UBQLNLQ8IYU4 475 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 TMCO5AQ8N6Q1 288 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 TNIP2Q8NFZ5 429 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 GPR119Q8TDV5 335 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 SLC38A5Q8WUX1 472 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 SMPDL3BQ92485 455 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 MAL2Q969L2 176 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 TRIM8Q9BZR9 551 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 IKZF5Q9H5V7 419 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 P2RX2Q9UBL9 471 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.74□□□□□ -0.21
LIG1-219ENST00000600055 Q9UFV3 132 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 NDUFAF1Q9Y375 327 aa13.74□□□□□ -0.21
LIG1-219ENST00000600055 MED12Q93074 2177 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 FAM47E-STBD1D6RA91 191 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 FBP2O00757 339 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 ANGPT2O15123 496 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 SEC14L5O43304 696 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 EIF4E2O60573 245 aaKnown RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 CLDN14O95500 239 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 OPN1LWP04000 364 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 UBTFL6P0CB48 400 aaPredicted RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 PEPDP12955 493 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 GP1BBP13224 206 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 IL11P20809 199 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 AGAP20933 346 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 PGM1P36871 562 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 MAGEA8P43361 318 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 CCR4P51679 360 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 CLDN20P56880 219 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 PLAURQ03405 335 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 FOXF1Q12946 379 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 KLF10Q13118 480 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 ART3Q13508 389 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 NSUN5P2Q63ZY6 315 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 EIF3MQ7L2H7 374 aaKnown RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 GTPBP8Q8N3Z3 284 aaPredicted RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 OR5W2Q8NH69 310 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 ZPLD1Q8TCW7 415 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 ZBTB8AQ96BR9 441 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 TMEM19Q96HH6 336 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 RNF145Q96MT1 663 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 THUMPD3Q9BV44 507 aaKnown RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 UCK2Q9BZX2 261 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 LAT2Q9GZY6 243 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 RAD21L1Q9H4I0 556 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.73□□□□□ -0.21
LIG1-219ENST00000600055 COQ3Q9NZJ6 369 aa13.73□□□□□ -0.21
LIG1-219ENST00000600055 DIDO1Q9BTC0 2240 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms