RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 DCST2Q5T1A1 773 aa8.78□□□□□ -1
VRK3-216ENST00000599342 IL23RQ5VWK5 629 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ANKRD34AQ69YU3 496 aa8.78□□□□□ -1
VRK3-216ENST00000599342 BHLHB9Q6PI77 547 aa8.78□□□□□ -1
VRK3-216ENST00000599342 C20orf204Q6ZNR8 217 aa8.78□□□□□ -1
VRK3-216ENST00000599342 BEND4Q6ZU67 534 aa8.78□□□□□ -1
VRK3-216ENST00000599342 BIVMQ86UB2 503 aa8.78□□□□□ -1
VRK3-216ENST00000599342 LILRA2Q8N149 483 aa8.78□□□□□ -1
VRK3-216ENST00000599342 LRRC75A-AS1Q8N1F1 130 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ZNF614Q8N883 585 aa8.78□□□□□ -1
VRK3-216ENST00000599342 PPP1R14CQ8TAE6 165 aa8.78□□□□□ -1
VRK3-216ENST00000599342 OR5P2Q8WZ92 322 aa8.78□□□□□ -1
VRK3-216ENST00000599342 MOAP1Q96BY2 351 aa8.78□□□□□ -1
VRK3-216ENST00000599342 TUBGCP3Q96CW5 907 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ADGRG7Q96K78 797 aa8.78□□□□□ -1
VRK3-216ENST00000599342 C18orf12Q96KH6 178 aa8.78□□□□□ -1
VRK3-216ENST00000599342 KLHL15Q96M94 604 aa8.78□□□□□ -1
VRK3-216ENST00000599342 NPAS1Q99742 590 aa8.78□□□□□ -1
VRK3-216ENST00000599342 PIP5K1AQ99755 562 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ROPN1BQ9BZX4 212 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 GSX1Q9H4S2 264 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 ANKZF1Q9H8Y5 726 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ROPN1Q9HAT0 212 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 TIGARQ9NQ88 270 aa8.78□□□□□ -1
VRK3-216ENST00000599342 PLSCR4Q9NRQ2 329 aa8.78□□□□□ -1
VRK3-216ENST00000599342 GIMAP2Q9UG22 337 aa8.78□□□□□ -1
VRK3-216ENST00000599342 A0A0J9YW62 118 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 GTPBP1O00178 669 aaKnown RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 TUBBP07437 444 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 BPGMP07738 259 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 INHBBP09529 407 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 LINGO3P0C6S8 592 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 PABPC4LP0CB38 370 aaKnown RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 PSMA4P25789 261 aaKnown RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 AGTR1P30556 359 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 SFTPDP35247 375 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 P2RX1P51575 399 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 SUMO3P55854 103 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 CARD18P57730 90 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 VSNL1P62760 191 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 ZNF117Q03924 483 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 BEX5Q5H9J7 111 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 EXOSC6Q5RKV6 272 aaKnown RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 TMEM201Q5SNT2 666 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 C6orf136Q5SQH8 315 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 CXorf67Q86X51 503 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 KRTCAP2Q8N6L1 136 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 TMCO5AQ8N6Q1 288 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 OR5AK3PQ8NH89 298 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 PSMA8Q8TAA3 256 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 POC1BQ8TC44 478 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 SFXN5Q8TD22 340 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 OSTF1Q92882 214 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 CPNE4Q96A23 557 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 C3orf30Q96M34 536 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 DUSP26Q9BV47 211 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 BHLHE41Q9C0J9 482 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 C12orf49Q9H741 205 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 CXorf36Q9H7Y0 433 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 ZNF395Q9H8N7 513 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 GPATCH2Q9NW75 528 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 NOP53Q9NZM5 478 aaKnown RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 ZDHHC2Q9UIJ5 367 aa8.77□□□□□ -1.01
VRK3-216ENST00000599342 GPC6Q9Y625 555 aaPredicted RBP8.77□□□□□ -1.01
VRK3-216ENST00000599342 NPIPA5A0A0B4J1W7 369 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 FAM171A2A8MVW0 826 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 NPIPA7E9PJI5 369 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 NPIPA8P0DM63 369 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 IL11P20809 199 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 ADH6P28332 368 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 RNF144AP50876 292 aaPredicted RBP8.76□□□□□ -1.01
VRK3-216ENST00000599342 CCR4P51679 360 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 ATP12AP54707 1039 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 NR1H2P55055 460 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 RNPS1Q15287 305 aaKnown RBP8.76□□□□□ -1.01
VRK3-216ENST00000599342 ZNF239Q16600 458 aaKnown RBP8.76□□□□□ -1.01
VRK3-216ENST00000599342 PGS1Q32NB8 556 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 KLHL26Q53HC5 615 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 EMBQ6PCB8 327 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 STAC2Q6ZMT1 411 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 KRTAP1-3Q8IUG1 177 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 NUDCD3Q8IVD9 361 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 RFWD2Q8NHY2 731 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 FBXO27Q8NI29 283 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 ARL8AQ96BM9 186 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 COQ8BQ96D53 544 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 PERPQ96FX8 193 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 HS3ST6Q96QI5 342 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 OR7D2Q96RA2 312 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 ACTR6Q9GZN1 396 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 OR10A4Q9H209 315 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 CARD8Q9Y2G2 431 aa8.76□□□□□ -1.01
VRK3-216ENST00000599342 AKAP6Q13023 2319 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.75□□□□□ -1.01
VRK3-216ENST00000599342 DUXAA6NLW8 204 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 ZNF195O14628 629 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 AK1P00568 194 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 G6PDP11413 515 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 UBL4AP11441 157 aa8.75□□□□□ -1.01
VRK3-216ENST00000599342 HOXB4P17483 251 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms