RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 VIMP08670 466 aaKnown RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 UBL4AP11441 157 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 CAPN3P20807 821 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 P2RX1P51575 399 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 ZNF41P51814 821 aaPredicted RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 HPCAP84074 193 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 BCL2A1Q16548 175 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SYPL1Q16563 259 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 TMEM44Q2T9K0 475 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 PLPPR5Q32ZL2 321 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 NDUFAF6Q330K2 333 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SP5Q6BEB4 398 aaPredicted RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 CBLN3Q6UW01 205 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 FRRS1Q6ZNA5 592 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 UBQLNLQ8IYU4 475 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 ZNF619Q8N2I2 560 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 ANKFN1Q8N957 763 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 TNIP2Q8NFZ5 429 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 LILRB4Q8NHJ6 448 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 AURKBQ96GD4 344 aaPredicted RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 TRNT1Q96Q11 434 aaKnown RBP12.52□□□□□ -0.41
UPF1-205ENST00000598209 TMEM120AQ9BXJ8 343 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SAP130Q9H0E3 1048 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 RABEP2Q9H5N1 569 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 ZNF385DQ9H6B1 395 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 CCDC134Q9H6E4 229 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 CALHM2Q9HA72 323 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 TPT1P8Q9HAU6 139 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 SLC52A3Q9NQ40 469 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 LIPT1Q9Y234 373 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 PCDHB14Q9Y5E9 798 aa12.52□□□□□ -0.41
UPF1-205ENST00000598209 A0A096LPI6 279 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CLCA1A8K7I4 914 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 HSPB2A8KAH6 182 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ZNF264O43296 627 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 H6PDO95479 791 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 NUDT14O95848 222 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 NR2F1P10589 423 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ETFAP13804 333 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CD1EP15812 388 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ZNF17P17021 662 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CEACAM8P31997 349 aaPredicted RBP12.51□□□□□ -0.41
UPF1-205ENST00000598209 TIMP3P35625 211 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 MDH1P40925 334 aaKnown RBP12.51□□□□□ -0.41
UPF1-205ENST00000598209 CRATP43155 626 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 MAGEA8P43361 318 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 MVDP53602 400 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 SUMO3P55854 103 aaPredicted RBP12.51□□□□□ -0.41
UPF1-205ENST00000598209 CHRNEQ04844 493 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 HSPB2Q16082 182 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 MAPK14Q16539 360 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 AP1ARQ63HQ0 302 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ZNF787Q6DD87 383 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CGB2Q6NT52 195 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 MEIOBQ8N635 442 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 TMCO5AQ8N6Q1 288 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 SMPDL3BQ92485 455 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ZBTB8AQ96BR9 441 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 NPAS1Q99742 590 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 UCK2Q9BZX2 261 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 SLC38A1Q9H2H9 487 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CHST11Q9NPF2 352 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 ICAM5Q9UMF0 924 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 L3MBTL1Q9Y468 752 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 AP4B1Q9Y6B7 739 aa12.51□□□□□ -0.41
UPF1-205ENST00000598209 CACNA1DQ01668 2161 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 C7orf72A4D263 438 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 NKX2-6A6NCS4 301 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 MBD3L4A6NDZ8 208 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 MBD3L3A6NE82 208 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 MBD3L5A6NJ08 208 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 C19orf84I3L1E1 186 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 CLIC1O00299 241 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 SEC14L5O43304 696 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 EIF4E2O60573 245 aaKnown RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 CSTAP01040 98 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 IL2RAP01589 272 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 CHRM4P08173 479 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 LINGO3P0C6S8 592 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 HOXB9P17482 250 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 CCR4P51679 360 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 SUCLG1P53597 346 aaKnown RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 DSTNP60981 165 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 SF3A3Q12874 501 aaKnown RBP eCLIP12.5□□□□□ -0.415e-7■■■□□ 14.8
UPF1-205ENST00000598209 FGFBP1Q14512 234 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 PAGE3Q5JUK9 113 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 LRIF1Q5T3J3 769 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 METTL21CQ5VZV1 264 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 PLXDC2Q6UX71 529 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 LRRC74BQ6ZQY2 392 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 CHMP1BQ7LBR1 199 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 HMGN2P46Q86SG4 172 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 ADGRE4PQ86SQ3 457 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 LIX1LQ8IVB5 337 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 GTPBP8Q8N3Z3 284 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 C9orf106Q8NAJ2 232 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 NAXEQ8NCW5 288 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 MBD3L2Q8NHZ7 208 aaPredicted RBP12.5□□□□□ -0.41
UPF1-205ENST00000598209 POC1BQ8TC44 478 aa12.5□□□□□ -0.41
UPF1-205ENST00000598209 OIT3Q8WWZ8 545 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms