RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 C7orf72A4D263 438 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 AGAP5A6NIR3 686 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 HNRNPCL2B2RXH8 293 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 HNRNPCL3B7ZW38 293 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 HNRNPCL1O60812 293 aaKnown RBP23.35■■□□□ 1.33
TRIM28-204ENST00000594806 CSTAP01040 98 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 HNRNPCL4P0DMR1 293 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 CPN1P15169 458 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 ACVR2AP27037 513 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 ZNF41P51814 821 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-204ENST00000594806 ZNF117Q03924 483 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 BCL2A1Q16548 175 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 TRMT5Q32P41 509 aaKnown RBP23.35■■□□□ 1.33
TRIM28-204ENST00000594806 ZNF585AQ6P3V2 769 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 RPTNQ6XPR3 784 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 PEX5LQ8IYB4 626 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 PCYOX1LQ8NBM8 494 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 OR5M9Q8NGP3 310 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 RP9Q8TA86 221 aaKnown RBP23.35■■□□□ 1.33
TRIM28-204ENST00000594806 SH3YL1Q96HL8 342 aaPredicted RBP23.35■■□□□ 1.33
TRIM28-204ENST00000594806 DMRTA2Q96SC8 542 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 BCL2L10Q9HD36 194 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 STOML1Q9UBI4 398 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 TENM4Q6N022 2769 aa23.35■■□□□ 1.33
TRIM28-204ENST00000594806 BAHCC1Q9P281 2608 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 HEATR5AQ86XA9 2040 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 FBP2O00757 339 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 BCHEP06276 602 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 DBIP07108 87 aaKnown RBP23.34■■□□□ 1.33
TRIM28-204ENST00000594806 ZNF17P17021 662 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 RPS4Y1P22090 263 aaKnown RBP23.34■■□□□ 1.33
TRIM28-204ENST00000594806 EIF1P41567 113 aaKnown RBP23.34■■□□□ 1.33
TRIM28-204ENST00000594806 B3GALT5-AS1P59052 145 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 KCNJ10P78508 379 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 MAPK11Q15759 364 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 MAPK14Q16539 360 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 ZSWIM7Q19AV6 140 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 TMEM44Q2T9K0 475 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 GCNT6Q5T4J0 391 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 RAET1LQ5VY80 246 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 OLIG3Q7RTU3 272 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 ARSGQ96EG1 525 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 WDYHV1Q96HA8 205 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 SH3GL1Q99961 368 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 CPPED1Q9BRF8 314 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-204ENST00000594806 TMEM38AQ9H6F2 299 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 RUBCNLQ9H714 662 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 TNFRSF10DQ9UBN6 386 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 CARD8Q9Y2G2 431 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 RPH3AQ9Y2J0 694 aaPredicted RBP23.34■■□□□ 1.33
TRIM28-204ENST00000594806 L3MBTL1Q9Y468 752 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 PCNX1Q96RV3 2341 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 MED12Q93074 2177 aa23.34■■□□□ 1.33
TRIM28-204ENST00000594806 DSPPQ9NZW4 1301 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 USP9XQ93008 2570 aaPredicted RBP23.33■■□□□ 1.33
TRIM28-204ENST00000594806 PEPDP12955 493 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 SMSP52788 366 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 MTDHQ86UE4 582 aaKnown RBP23.33■■□□□ 1.33
TRIM28-204ENST00000594806 SNX32Q86XE0 403 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 ULK2Q8IYT8 1036 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 FAM71CQ8NEG0 241 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 OR5W2Q8NH69 310 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 ZG16BQ96DA0 208 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 CCDC120Q96HB5 630 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 TREX2Q9BQ50 279 aaPredicted RBP23.33■■□□□ 1.33
TRIM28-204ENST00000594806 CACYBPQ9HB71 228 aaKnown RBP23.33■■□□□ 1.33
TRIM28-204ENST00000594806 MED17Q9NVC6 651 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 GID8Q9NWU2 228 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 PRDM4Q9UKN5 801 aa23.33■■□□□ 1.33
TRIM28-204ENST00000594806 NCOA6Q14686 2063 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-204ENST00000594806 LOC100653049A0A140TA62 436 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 C5orf58C9J3I9 102 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 MRASO14807 208 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 KRT34O76011 436 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ARAFP10398 606 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 IL7RP16871 459 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 AGAP20933 346 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ADH6P28332 368 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 PGM1P36871 562 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 SKP2Q13309 424 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 CBFBQ13951 182 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 PLPPR5Q32ZL2 321 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 C1orf185Q5T7R7 199 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 CBLN3Q6UW01 205 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ARSKQ6UWY0 536 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 B3GNT6Q6ZMB0 384 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 PIGWQ7Z7B1 504 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 GTPBP8Q8N3Z3 284 aaPredicted RBP23.32■■□□□ 1.32
TRIM28-204ENST00000594806 BBS10Q8TAM1 723 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ZPLD1Q8TCW7 415 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 TMEM19Q96HH6 336 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 THUMPD3Q9BV44 507 aaKnown RBP23.32■■□□□ 1.32
TRIM28-204ENST00000594806 CCDC106Q9BWC9 280 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 EXOSC3Q9NQT5 275 aaKnown RBP23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ALKBH4Q9NXW9 302 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ARMCX1Q9P291 453 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 CAMK2AQ9UQM7 478 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 VDAC3Q9Y277 283 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 AP4B1Q9Y6B7 739 aa23.32■■□□□ 1.32
TRIM28-204ENST00000594806 ARHGAP21Q5T5U3 1957 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms