RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 BSGP35613 385 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 NR1H2P55055 460 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 GAB4Q2WGN9 574 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 TMEM201Q5SNT2 666 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 ATAD3CQ5T2N8 411 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 LRIF1Q5T3J3 769 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 EEF1A1P5Q5VTE0 462 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 CARD17Q5XLA6 110 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 WBP2NLQ6ICG8 309 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 ULK3Q6PHR2 472 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 LAPTM4BQ86VI4 370 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 NEK7Q8TDX7 302 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 PFDN5Q99471 154 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 COPS4Q9BT78 406 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 SH3BGRL2Q9UJC5 107 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 C19orf53Q9UNZ5 99 aaPredicted RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 PNMA8CA0A1B0GUJ8 204 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 SMCO3A2RU48 225 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 RAB19A4D1S5 217 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 UTS2O95399 124 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 GCGRP47871 477 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 PDX1P52945 283 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 GBX2P52951 348 aaPredicted RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 PPP3R1P63098 170 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 PHC1P78364 1004 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 BTG2P78543 158 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 RUNX2Q13950 521 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 SLC36A3Q495N2 470 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 PERM1Q5SV97 790 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 PGBD2Q6P3X8 592 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 MZT2AQ6P582 158 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 NRMQ8IXM6 262 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 B3GNT7Q8NFL0 401 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 OR4C15Q8NGM1 316 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 BORCS5Q969J3 196 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 TREX2Q9BQ50 279 aaPredicted RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 NRSN2Q9GZP1 204 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 LIN28AQ9H9Z2 209 aaKnown RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 AMBNQ9NP70 447 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 MBD1Q9UIS9 605 aaPredicted RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 CAMK2AQ9UQM7 478 aa9.16□□□□□ -0.94
LIG3-216ENST00000593099 ZNF443Q9Y2A4 671 aaPredicted RBP9.16□□□□□ -0.94
LIG3-216ENST00000593099 SERINC4A6NH21 518 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 G3V3Y1 287 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 CTSVO60911 334 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 ITIH1P19827 911 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 FMO3P31513 532 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 EIF1AXP47813 144 aaKnown RBP9.15□□□□□ -0.94
LIG3-216ENST00000593099 UBE2IP63279 158 aaKnown RBP9.15□□□□□ -0.94
LIG3-216ENST00000593099 PIGGQ5H8A4 983 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 TMEM105Q8N8V8 129 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 ENKURQ8TC29 256 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 TBX5Q99593 518 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 SPNS1Q9H2V7 528 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 SPTBN2O15020 2390 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 PRAMEF25A6NGN4 478 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 CCNKO75909 580 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 CCNOP22674 350 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 DPP4P27487 766 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 SLC15A1P46059 708 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 GNG2P59768 71 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 UBE2NP61088 152 aaKnown RBP9.15□□□□□ -0.94
LIG3-216ENST00000593099 ANKDD1AQ495B1 522 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 ADNP2Q6IQ32 1131 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 TMPPEQ6ZT21 453 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 THEM6Q8WUY1 208 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 MAELQ96JY0 434 aaKnown RBP9.15□□□□□ -0.94
LIG3-216ENST00000593099 ARL5BQ96KC2 179 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 NODALQ96S42 347 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 WDR77Q9BQA1 342 aaPredicted RBP9.15□□□□□ -0.94
LIG3-216ENST00000593099 SLC6A15Q9H2J7 730 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 AGPAT4Q9NRZ5 378 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 NPFFR2Q9Y5X5 522 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 ASXL3Q9C0F0 2248 aa9.15□□□□□ -0.94
LIG3-216ENST00000593099 OR6C76A6NM76 312 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 WNT1P04628 370 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 DBTP11182 482 aaKnown RBP9.15□□□□□ -0.95
LIG3-216ENST00000593099 CKMT1AP12532 417 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 CD22P20273 847 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 TNFRSF1BP20333 461 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 GPR4P46093 362 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 PIN1Q13526 163 aaPredicted RBP9.15□□□□□ -0.95
LIG3-216ENST00000593099 DGUOKQ16854 277 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 FCRLBQ6BAA4 426 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 SLC23A3Q6PIS1 610 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 AMER2Q8N7J2 671 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 TCEANCQ8N8B7 351 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 ANKRD53Q8N9V6 530 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 ZFP90Q8TF47 636 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 CPPED1Q9BRF8 314 aaPredicted RBP9.15□□□□□ -0.95
LIG3-216ENST00000593099 ANKRD10Q9NXR5 420 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 TMEM181Q9P2C4 612 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 RSL24D1Q9UHA3 163 aaKnown RBP9.15□□□□□ -0.95
LIG3-216ENST00000593099 ZNF221Q9UK13 617 aa9.15□□□□□ -0.95
LIG3-216ENST00000593099 CASKO14936 926 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 ACOX3O15254 700 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 B4GAT1O43505 415 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PNLIPP16233 465 aa9.14□□□□□ -0.95
LIG3-216ENST00000593099 PSMA1P25786 263 aaKnown RBP9.14□□□□□ -0.95
LIG3-216ENST00000593099 RASGEF1BQ0VAM2 473 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms