RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FBXL19-AS1Q494R0 122 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 MED12LQ86YW9 2145 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 GTPBP8Q8N3Z3 284 aaPredicted RBP21.54■■□□□ 1.04
SHMT1-206ENST00000579558 DYDC1Q8WWB3 177 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 NEURL3Q96EH8 262 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 LURAP1Q96LR2 239 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 PANX1Q96RD7 426 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 KLHDC3Q9BQ90 382 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 PINK1Q9BXM7 581 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 VIPAS39Q9H9C1 493 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 KCNN3Q9UGI6 736 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 CARD8Q9Y2G2 431 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 L3MBTL1Q9Y468 752 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 DCHS2Q6V1P9 2916 aa21.54■■□□□ 1.04
SHMT1-206ENST00000579558 C7orf72A4D263 438 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 HMGB1P1B2RPK0 211 aaPredicted RBP21.53■■□□□ 1.04
SHMT1-206ENST00000579558 GTPBP1O00178 669 aaKnown RBP21.53■■□□□ 1.04
SHMT1-206ENST00000579558 OIP5O43482 229 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 TNFRSF21O75509 655 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 KHKP50053 298 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 RPS3AP61247 264 aaKnown RBP21.53■■□□□ 1.04
SHMT1-206ENST00000579558 LRRC74AQ0VAA2 488 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 GPR68Q15743 365 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 GSTA3Q16772 222 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 ATAD3BQ5T9A4 648 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 TRIML2Q8N7C3 387 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 XAGE5Q8WWM1 108 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 RAB8BQ92930 207 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 RNF145Q96MT1 663 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 NPAS1Q99742 590 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF559Q9BR84 538 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 INPP5KQ9BT40 448 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 NMUR2Q9GZQ4 415 aa21.53■■□□□ 1.04
SHMT1-206ENST00000579558 FOXD3Q9UJU5 478 aaPredicted RBP21.53■■□□□ 1.04
SHMT1-206ENST00000579558 CCDC154A6NI56 674 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 UBDO15205 165 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 SLC22A3O75751 556 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 NUDT14O95848 222 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 P2RX1P51575 399 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 SUMO3P55854 103 aaPredicted RBP21.52■■□□□ 1.04
SHMT1-206ENST00000579558 SNTB1Q13884 538 aaKnown RBP21.52■■□□□ 1.04
SHMT1-206ENST00000579558 NDUFAF6Q330K2 333 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 PDZK1Q5T2W1 519 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 HEPHL1Q6MZM0 1159 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 CBLN3Q6UW01 205 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 OLIG3Q7RTU3 272 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 GGNQ86UU5 652 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 METTL25Q8N6Q8 603 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 FIG4Q92562 907 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 ZNF350Q9GZX5 532 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 MCCC2Q9HCC0 563 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 SLCO1B3Q9NPD5 702 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 MKLN1Q9UL63 735 aa21.52■■□□□ 1.04
SHMT1-206ENST00000579558 EIF1AYO14602 144 aaKnown RBP21.51■■□□□ 1.03
SHMT1-206ENST00000579558 FCMRO60667 390 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 IL6P05231 212 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 PEX19P40855 299 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 CDKN2CP42773 168 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 OR2A2Q6IF42 318 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 EPGNQ6UW88 154 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF621Q6ZSS3 439 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 TMCO5AQ8N6Q1 288 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF845Q96IR2 970 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-206ENST00000579558 SDR39U1Q9NRG7 319 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-206ENST00000579558 ZIM2Q9NZV7 527 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 JKAMPQ9P055 326 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 ICAM5Q9UMF0 924 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF175Q9Y473 711 aa21.51■■□□□ 1.03
SHMT1-206ENST00000579558 A0A1W2PNV4 684 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 SERINC4A6NH21 518 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 C1QCP02747 245 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 GSNP06396 782 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 LINGO3P0C6S8 592 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 UBL4AP11441 157 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 PSMA4P25789 261 aaKnown RBP21.5■■□□□ 1.03
SHMT1-206ENST00000579558 KIR2DL3P43628 341 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 KRTAP10-9P60411 292 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 RAC1P63000 192 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 PPP2R2AP63151 447 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 EEF1A1P68104 462 aaKnown RBP21.5■■□□□ 1.03
SHMT1-206ENST00000579558 FOXF1Q12946 379 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 PON3Q15166 354 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF141Q15928 474 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 SGCBQ16585 318 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 EEF1A1P5Q5VTE0 462 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 RNF130Q86XS8 419 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 RFWD2Q8NHY2 731 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 FNDC9Q8TBE3 224 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 POC1BQ8TC44 478 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 ROPN1LQ96C74 230 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 PIGMQ9H3S5 423 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 INTS9Q9NV88 658 aaKnown RBP21.5■■□□□ 1.03
SHMT1-206ENST00000579558 WDR45Q9Y484 360 aa21.5■■□□□ 1.03
SHMT1-206ENST00000579558 RFXANKO14593 260 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 ZNF264O43296 627 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 KIAA0513O60268 411 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 EIF4E2O60573 245 aaKnown RBP21.49■■□□□ 1.03
SHMT1-206ENST00000579558 UGT2B17O75795 530 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 OPN1LWP04000 364 aa21.49■■□□□ 1.03
SHMT1-206ENST00000579558 CRHP06850 196 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms