RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 HDHD5Q9BXW7 423 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 BAIAP2L1Q9UHR4 511 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 ADAM21Q9UKJ8 722 aa18.78■□□□□ 0.6
VPS53-216ENST00000574029 HIVEP2P31629 2446 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 AZIN1O14977 448 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 NEFHP12036 1026 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 ELK4P28324 431 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 CCT5P48643 541 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 PRIM2P49643 509 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 TNK1Q13470 666 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 MLC1Q15049 377 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 LIPMQ5VYY2 423 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 TDRPQ86YL5 185 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 GABRG1Q8N1C3 465 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 LILRB1Q8NHL6 650 aaPredicted RBP18.77■□□□□ 0.6
VPS53-216ENST00000574029 CLHC1Q8NHS4 586 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 RAB3IL1Q8TBN0 382 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 AENQ8WTP8 325 aaKnown RBP18.77■□□□□ 0.6
VPS53-216ENST00000574029 ABHD3Q8WU67 409 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 MTERF3Q96E29 417 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 BTBD2Q9BX70 525 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 C12orf65Q9H3J6 166 aaKnown RBP18.77■□□□□ 0.6
VPS53-216ENST00000574029 TUBB1Q9H4B7 451 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 SIRT3Q9NTG7 399 aaPredicted RBP18.77■□□□□ 0.6
VPS53-216ENST00000574029 LAMP3Q9UQV4 416 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 TMED5Q9Y3A6 229 aa18.77■□□□□ 0.6
VPS53-216ENST00000574029 OVOL3O00110 214 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 EFNA2O43921 213 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 SHBGP04278 402 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 ADH6P28332 368 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 SFTPDP35247 375 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 RPS4XP62701 263 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 RPL38P63173 70 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 POU6F2P78424 691 aaPredicted RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 ZNF117Q03924 483 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 KRTAP1-1Q07627 177 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 FOXF1Q12946 379 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 RNPS1Q15287 305 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 TMEM201Q5SNT2 666 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 EMBQ6PCB8 327 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 TFAP2EQ6VUC0 442 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 NUFIP2Q7Z417 695 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 MTERF4Q7Z6M4 381 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 CCDC63Q8NA47 563 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 CPNE4Q96A23 557 aaPredicted RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 FAM120BQ96EK7 910 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 OTUB1Q96FW1 271 aaPredicted RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 STACQ99469 402 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 TACO1Q9BSH4 297 aaKnown RBP18.76■□□□□ 0.59
VPS53-216ENST00000574029 SRXN1Q9BYN0 137 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 GP6Q9HCN6 339 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 TIGARQ9NQ88 270 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 DUSP22Q9NRW4 184 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 GIN1Q9NXP7 522 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 KLHL13Q9P2N7 655 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 ZANQ9Y493 2812 aa18.76■□□□□ 0.59
VPS53-216ENST00000574029 ROS1P08922 2347 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 LSM1O15116 133 aaKnown RBP18.75■□□□□ 0.59
VPS53-216ENST00000574029 EFNA1P20827 205 aaPredicted RBP18.75■□□□□ 0.59
VPS53-216ENST00000574029 ASMTP46597 345 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 NCMAPQ5T1S8 102 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 SFRP5Q5T4F7 317 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 KANK2Q63ZY3 851 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 TUSC5Q8IXB3 177 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 JADE3Q92613 823 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 REXO5Q96IC2 774 aaKnown RBP18.75■□□□□ 0.59
VPS53-216ENST00000574029 PARD6BQ9BYG5 372 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 PIGUQ9H490 435 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 ZCCHC3Q9NUD5 404 aaKnown RBP18.75■□□□□ 0.59
VPS53-216ENST00000574029 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.75■□□□□ 0.59
VPS53-216ENST00000574029 RAB21Q9UL25 225 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 FIS1Q9Y3D6 152 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 RNF115Q9Y4L5 304 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 DNAJC15Q9Y5T4 150 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 ACTL7BQ9Y614 415 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 V9GYY5 206 aaPredicted RBP18.75■□□□□ 0.59
VPS53-216ENST00000574029 PRR14LQ5THK1 2151 aa18.75■□□□□ 0.59
VPS53-216ENST00000574029 JMJD1CQ15652 2540 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 GJE1A6NN92 205 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 ZNF195O14628 629 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 CRLF1O75462 422 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 HMGN2P05204 90 aaKnown RBP18.74■□□□□ 0.59
VPS53-216ENST00000574029 LINC00032P0C843 101 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 TSC22D1Q15714 1073 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 TAB1Q15750 504 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 KLHL26Q53HC5 615 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 CBLN3Q6UW01 205 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 R3HCC1LQ7Z5L2 792 aaKnown RBP18.74■□□□□ 0.59
VPS53-216ENST00000574029 C10orf107Q8IVU9 208 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 FBXO27Q8NI29 283 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 PHOSPHO1Q8TCT1 267 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 CDS1Q92903 461 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 TRMOQ9BU70 441 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 GATA5Q9BWX5 397 aaPredicted RBP18.74■□□□□ 0.59
VPS53-216ENST00000574029 ATP6V1HQ9UI12 483 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 ICAM5Q9UMF0 924 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 SNX8Q9Y5X2 465 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 USF3Q68DE3 2245 aa18.74■□□□□ 0.59
VPS53-216ENST00000574029 COPEO14579 308 aa18.73■□□□□ 0.59
VPS53-216ENST00000574029 OIP5O43482 229 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms