RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NIPAL3Q6P499 406 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SLC39A5Q6ZMH5 540 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 GJD3Q8N144 294 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 CYB561A3Q8NBI2 242 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 GANCQ8TET4 914 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 RSPRY1Q96DX4 576 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 PIGUQ9H490 435 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 NT5DC2Q9H857 520 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SLC6A20Q9NP91 592 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SLCO1C1Q9NYB5 712 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 COQ3Q9NZJ6 369 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 CES1P1Q9UKY3 287 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 UBL4AP11441 157 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 HK1P19367 917 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 MAKP20794 623 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 STOMP27105 288 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 NOS3P29474 1203 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 PER3P56645 1201 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ZNF234Q14588 700 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 CDC73Q6P1J9 531 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 WDR88Q6ZMY6 472 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 FRRS1Q6ZNA5 592 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 TMIEQ8NEW7 156 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 OR7G2Q8NG99 324 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 OR4D9Q8NGE8 314 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 FANK1Q8TC84 345 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 UBL7Q96S82 380 aaPredicted RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 GHITMQ9H3K2 345 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 NARFLQ9H6Q4 476 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 TRIM36Q9NQ86 728 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 SPHK1Q9NYA1 384 aa12.29□□□□□ -0.44
CLN3-210ENST00000563874 ZNF443Q9Y2A4 671 aaPredicted RBP12.29□□□□□ -0.44
CLN3-210ENST00000563874 SCN2AQ99250 2005 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 NPIPA5A0A0B4J1W7 369 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 TEX13CA0A0J9YWL9 993 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 NPIPA7E9PJI5 369 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 FZD7O75084 574 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 HMGN1P05114 100 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 NPIPA8P0DM63 369 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 TEAD1P28347 426 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 PKLRP30613 574 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 RAB28P51157 221 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 OR12D2P58182 307 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 BTG1P62324 171 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 BTN3A2P78410 334 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 DGCR2P98153 550 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 TMEM44Q2T9K0 475 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 WDR45BQ5MNZ6 344 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 ZNF836Q6ZNA1 936 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 MEPCEQ7L2J0 689 aaKnown RBP12.28□□□□□ -0.44
CLN3-210ENST00000563874 TMEM151BQ8IW70 566 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 CCDC120Q96HB5 630 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 C4orf36Q96KX1 117 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 MED17Q9NVC6 651 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 NLGN3Q9NZ94 848 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 APOBEC3BQ9UH17 382 aaKnown RBP12.28□□□□□ -0.44
CLN3-210ENST00000563874 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 EDDM13A0A1B0GTR0 161 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 A0A1W2PRG6 482 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 TCRBP04435 133 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 GLULP15104 373 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 EPCAMP16422 314 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 DDX6P26196 483 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLN3-210ENST00000563874 RBMS1P29558 406 aaKnown RBP12.28□□□□□ -0.44
CLN3-210ENST00000563874 PRKAR1BP31321 381 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 FGFBP1Q14512 234 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 POU4F3Q15319 338 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 SLC36A2Q495M3 483 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 TMEM35AQ53FP2 167 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 MRM1Q6IN84 353 aaKnown RBP12.28□□□□□ -0.44
CLN3-210ENST00000563874 TEX261Q6UWH6 196 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 THSD4Q6ZMP0 1018 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 ANKRD33Q7Z3H0 272 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 SIAH3Q8IW03 269 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 KCT2Q8NC54 265 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 ZNF680Q8NEM1 530 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 GIMAP5Q96F15 307 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 WDR45Q9Y484 360 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 ZNF780BQ9Y6R6 833 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 U3KQ87 197 aa12.28□□□□□ -0.44
CLN3-210ENST00000563874 ABHD14A-ACY1A0A1B0GW23 586 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 CIB4A0PJX0 185 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 UNC119BA6NIH7 251 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 SLC22A5O76082 557 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 TOXO94900 526 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 SOX30O94993 753 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 SNRPBP14678 240 aaKnown RBP12.27□□□□□ -0.44
CLN3-210ENST00000563874 NPR2P20594 1047 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 RFX3P48380 749 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 HCCSP53701 268 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 NOGQ13253 232 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 ZIC1Q15915 447 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 PRPF38BQ5VTL8 546 aaKnown RBP12.27□□□□□ -0.44
CLN3-210ENST00000563874 IZUMO1Q8IYV9 350 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 TOMM5Q8N4H5 51 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 LINC00469Q8N7U9 141 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 OR2L5Q8NG80 312 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 ABHD4Q8TB40 342 aa12.27□□□□□ -0.44
CLN3-210ENST00000563874 PTP4A1Q93096 173 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms