RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ZCCHC18P0CG32 403 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 OPRM1P35372 400 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 PEX19P40855 299 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 ZNF141Q15928 474 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 HSP90B2PQ58FF3 399 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 OR2A2Q6IF42 318 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 MEX3BQ6ZN04 569 aaKnown RBP12.1□□□□□ -0.47
CLK3-213ENST00000563842 P4HA3Q7Z4N8 544 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 GDF7Q7Z4P5 450 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 GRAMD2AQ8IUY3 354 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 UBQLNLQ8IYU4 475 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 GTPBP8Q8N3Z3 284 aaPredicted RBP12.1□□□□□ -0.47
CLK3-213ENST00000563842 TOR1AIP2Q8NFQ8 470 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 ROPN1LQ96C74 230 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 SIKE1Q9BRV8 207 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 INPP5KQ9BT40 448 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 ZNF350Q9GZX5 532 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 TMEM45AQ9NWC5 275 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 PAQR5Q9NXK6 330 aaPredicted RBP12.1□□□□□ -0.47
CLK3-213ENST00000563842 FOXD3Q9UJU5 478 aaPredicted RBP12.1□□□□□ -0.47
CLK3-213ENST00000563842 WDR45Q9Y484 360 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 ITPR2Q14571 2701 aa12.1□□□□□ -0.47
CLK3-213ENST00000563842 NPIPA5A0A0B4J1W7 369 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 SERINC4A6NH21 518 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 NPIPA7E9PJI5 369 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 C19orf84I3L1E1 186 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ZNF264O43296 627 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 TNFRSF21O75509 655 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 RCBTB2O95199 551 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 CRHP06850 196 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 NPIPA8P0DM63 369 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 TMIGD3P0DMS9 266 aaPredicted RBP12.09□□□□□ -0.47
CLK3-213ENST00000563842 UBL4AP11441 157 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 BMP5P22003 454 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ME2P23368 584 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ADH6P28332 368 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 CDKN2CP42773 168 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ATP4BP51164 291 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 CASP9P55211 416 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ZNF117Q03924 483 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 TFF3Q07654 80 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 CD226Q15762 336 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 TMEM44Q2T9K0 475 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 PLPPR5Q32ZL2 321 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 GPAT3Q53EU6 434 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 PDSS1Q5T2R2 415 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 PDZK1Q5T2W1 519 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 AP1ARQ63HQ0 302 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ARSKQ6UWY0 536 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 RNF130Q86XS8 419 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 LIX1LQ8IVB5 337 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 ZNF619Q8N2I2 560 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 PMM1Q92871 262 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 RAB8BQ92930 207 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 EBF4Q9BQW3 602 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 SAP130Q9H0E3 1048 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 RABEP2Q9H5N1 569 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 MED17Q9NVC6 651 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 THUMPD1Q9NXG2 353 aaKnown RBP12.09□□□□□ -0.47
CLK3-213ENST00000563842 CLCF1Q9UBD9 225 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 MKLN1Q9UL63 735 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 TRIM33Q9UPN9 1127 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 CARD8Q9Y2G2 431 aa12.09□□□□□ -0.47
CLK3-213ENST00000563842 GPC6Q9Y625 555 aaPredicted RBP12.09□□□□□ -0.47
CLK3-213ENST00000563842 HMGN4O00479 90 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 SEC14L5O43304 696 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 KIAA0513O60268 411 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 FCMRO60667 390 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 CSTAP01040 98 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 GSNP06396 782 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 SNRPB2P08579 225 aaKnown RBP12.08□□□□□ -0.48
CLK3-213ENST00000563842 ASCL1P50553 236 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 ZNF136P52737 540 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 RAC1P63000 192 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 CBFBQ13951 182 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 SGCBQ16585 318 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 TIGD2Q4W5G0 525 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 C6orf10Q5SRN2 563 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.08□□□□□ -0.48
CLK3-213ENST00000563842 EIF3MQ7L2H7 374 aaKnown RBP12.08□□□□□ -0.48
CLK3-213ENST00000563842 MCEMP1Q8IX19 187 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 TMCO5AQ8N6Q1 288 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 C9orf106Q8NAJ2 232 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 ACBD4Q8NC06 268 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 NAXEQ8NCW5 288 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 OR5M1Q8NGP8 315 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 OR9I1Q8NGQ6 314 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 OR5W2Q8NH69 310 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 ZFP90Q8TF47 636 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 SMPDL3BQ92485 455 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 TRNT1Q96Q11 434 aaKnown RBP12.08□□□□□ -0.48
CLK3-213ENST00000563842 TREX2Q9BQ50 279 aaPredicted RBP12.08□□□□□ -0.48
CLK3-213ENST00000563842 SFXN3Q9BWM7 321 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 LAT2Q9GZY6 243 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 RAD21L1Q9H4I0 556 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.08□□□□□ -0.48
CLK3-213ENST00000563842 ICAM5Q9UMF0 924 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 SLC35A3Q9Y2D2 325 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 ZNF175Q9Y473 711 aa12.08□□□□□ -0.48
CLK3-213ENST00000563842 FBN2P35556 2912 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms