RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 OR4A15Q8NGL6 344 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 SLC35G5Q96KT7 338 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 RNF145Q96MT1 663 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 SLC39A3Q9BRY0 314 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 RNF122Q9H9V4 155 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 PNPOQ9NVS9 261 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 MCTS1Q9ULC4 181 aaKnown RBP15.15■□□□□ 0.02
CLK3-210ENST00000563112 KCNE3Q9Y6H6 103 aa15.15■□□□□ 0.02
CLK3-210ENST00000563112 HRNRQ86YZ3 2850 aaPredicted RBP15.14■□□□□ 0.01
CLK3-210ENST00000563112 RNF103-CHMP3A0A140T963 221 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 PRSS51A0A1B0GVH4 220 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 SH3D21A4FU49 640 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 CPSF4O95639 269 aaKnown RBP15.14■□□□□ 0.01
CLK3-210ENST00000563112 AK1P00568 194 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 PLGP00747 810 aaPredicted RBP15.14■□□□□ 0.01
CLK3-210ENST00000563112 DNASE1P24855 282 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 KIR2DL2P43627 348 aaPredicted RBP15.14■□□□□ 0.01
CLK3-210ENST00000563112 PCYT1AP49585 367 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 P2RX1P51575 399 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ZNF117Q03924 483 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 DPY19L1Q2PZI1 675 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 KLHL26Q53HC5 615 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 VWA1Q6PCB0 445 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ESPNLQ6ZVH7 1005 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 BTLAQ7Z6A9 289 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 CLECL1Q8IZS7 167 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ZNF614Q8N883 585 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 TESCQ96BS2 214 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 MEAF6Q9HAF1 191 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 EXD2Q9NVH0 621 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ELOVL5Q9NYP7 299 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ST6GALNAC2Q9UJ37 374 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 PROCRQ9UNN8 238 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 DTNAQ9Y4J8 743 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 ITPR3Q14573 2671 aa15.14■□□□□ 0.01
CLK3-210ENST00000563112 NPIPA5A0A0B4J1W7 369 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 TMEM120BA0PK00 339 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 NPIPA7E9PJI5 369 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 AGR2O95994 175 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 NPIPA8P0DM63 369 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 CD8BP10966 210 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 PSMA4P25789 261 aaKnown RBP15.13■□□□□ 0.01
CLK3-210ENST00000563112 CD79BP40259 229 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 KCNJ5P48544 419 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 IST1P53990 364 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 SUMO3P55854 103 aaPredicted RBP15.13■□□□□ 0.01
CLK3-210ENST00000563112 CTBP2P56545 445 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 RPS26P62854 115 aaKnown RBP15.13■□□□□ 0.01
CLK3-210ENST00000563112 ATG16L1Q676U5 607 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 OR5D16Q8NGK9 328 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 OR10D3Q8NH80 312 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 OR2V1Q8NHB1 315 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 SDF2Q99470 211 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 OPN3Q9H1Y3 402 aaPredicted RBP15.13■□□□□ 0.01
CLK3-210ENST00000563112 THAP1Q9NVV9 213 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 NKIRAS1Q9NYS0 192 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 CARD8Q9Y2G2 431 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 EMC9Q9Y3B6 208 aa15.13■□□□□ 0.01
CLK3-210ENST00000563112 TRPC5OSA6NMA1 111 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 ADAMDEC1O15204 470 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 CXCL13O43927 109 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 EIF4E2O60573 245 aaKnown RBP15.12■□□□□ 0.01
CLK3-210ENST00000563112 AQP8O94778 261 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 OPN1LWP04000 364 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 LINGO3P0C6S8 592 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 POU2F1P14859 743 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 UQCRC2P22695 453 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 ELK4P28324 431 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 ADH6P28332 368 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 S100A3P33764 101 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 FAM27E3Q08E93 113 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 ATAD3BQ5T9A4 648 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 HBMQ6B0K9 141 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 GTF2IRD2BQ6EKJ0 949 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 OGFOD2Q6N063 350 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 FAM214BQ7L5A3 538 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 C16orf62Q7Z3J2 963 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 SPATA19Q7Z5L4 167 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 GTF2IRD2Q86UP8 949 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 LILRA2Q8N149 483 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 CHDHQ8NE62 594 aaPredicted RBP15.12■□□□□ 0.01
CLK3-210ENST00000563112 POC1BQ8TC44 478 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 MGARPQ8TDB4 240 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 ARL8AQ96BM9 186 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 REXO5Q96IC2 774 aaKnown RBP15.12■□□□□ 0.01
CLK3-210ENST00000563112 KLHL15Q96M94 604 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 TMEM185BQ9H7F4 350 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 TIGARQ9NQ88 270 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 GLRX2Q9NS18 164 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 CCM2LQ9NUG4 571 aaPredicted RBP15.12■□□□□ 0.01
CLK3-210ENST00000563112 ICAM5Q9UMF0 924 aa15.12■□□□□ 0.01
CLK3-210ENST00000563112 GPC6Q9Y625 555 aaPredicted RBP15.12■□□□□ 0.01
CLK3-210ENST00000563112 A0A0J9YW62 118 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 GJE1A6NN92 205 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 NPIPB9F8W1W9 429 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 TNFSF11O14788 317 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 ZNF264O43296 627 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 STX11O75558 287 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 PABPC4LP0CB38 370 aaKnown RBP15.11■□□□□ 0.01
CLK3-210ENST00000563112 RNF144AP50876 292 aaPredicted RBP15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms