RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-225ENST00000561391 ULK4Q96C45 1275 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 ROPN1LQ96C74 230 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 NXNL1Q96CM4 212 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 THOC1Q96FV9 657 aaKnown RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 ZNF778Q96MU6 729 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 LYSMD1Q96S90 227 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 CD180Q99467 661 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 PKP2Q99959 881 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 HOPXQ9BPY8 73 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 PIMREGQ9BSJ6 248 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 THTPAQ9BU02 230 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 IFT27Q9BW83 186 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 TDRD1Q9BXT4 1180 aaKnown RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 HES7Q9BYE0 225 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 VCXQ9H320 206 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 Q9H521 79 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 DENND2DQ9H6A0 471 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 CAB39LQ9H9S4 337 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 UBTD1Q9HAC8 227 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 MEAF6Q9HAF1 191 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 ZNF160Q9HCG1 818 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 Q9N2J8 555 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 C8orf4Q9NR00 106 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 FBXO6Q9NRD1 293 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 GID8Q9NWU2 228 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 TMEM160Q9NX00 188 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 SOHLH2Q9NX45 425 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 C6orf203Q9P0P8 240 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 CPSF2Q9P2I0 782 aaKnown RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 ZNF624Q9P2J8 865 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 STX18Q9P2W9 335 aaKnown RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 UPB1Q9UBR1 384 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 MARCOQ9UEW3 520 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 SLC2A6Q9UGQ3 507 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 TRMT6Q9UJA5 497 aaKnown RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 SLC17A4Q9Y2C5 497 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 AP3M1Q9Y2T2 418 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 PPIL1Q9Y3C6 166 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 PCYT1BQ9Y5K3 369 aaPredicted RBP2.93□□□□□ -1.94
SPG11-225ENST00000561391 PCLOQ9Y6V0 5065 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 TRRAPQ9Y4A5 3859 aa2.93□□□□□ -1.94
SPG11-225ENST00000561391 HYDINQ4G0P3 5121 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 KIR2DS5A0A0G2JLQ3 304 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 A0A0G2JNG1 304 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 OR5H15A6NDH6 313 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 OR5K4A6NMS3 321 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 A8MT66 165 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 A8MUI8 341 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 KDM4EB2RXH2 506 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 E7EQ34 232 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 H0YJX3 145 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 KIR2DS3K7RE56 304 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 PSMD12O00232 456 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 LIN7AO14910 233 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 SLC16A5O15375 505 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 TCF21O43680 179 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 CDC40O60508 579 aaKnown RBP eCLIP2.92□□□□□ -1.94
SPG11-225ENST00000561391 SUPT7LO94864 414 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 TMCC1O94876 653 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 AP2A2O94973 939 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 SOX30O94993 753 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 WISP3O95389 354 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 PSMG1O95456 288 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 OTCP00480 354 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 IL1AP01583 271 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 HIST1H2AGP0C0S8 130 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 UROSP10746 265 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 F3P13726 295 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 ENO3P13929 434 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 GFAPP14136 432 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 SLC2A4P14672 509 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 IDO1P14902 403 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 CD1DP15813 335 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 VCLP18206 1134 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 XRCC1P18887 633 aaPredicted RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 HIST1H2ADP20671 130 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 MMP11P24347 488 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 EEF1DP29692 281 aaKnown RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 FMO4P31512 558 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 GGT5P36269 586 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 PEX19P40855 299 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 NSG1P42857 185 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 GPR1P46091 355 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 CAPZBP47756 277 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 MRPL19P49406 292 aaKnown RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 HNMTP50135 292 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 CTSCP53634 463 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 CDKN2DP55273 166 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 ATP5J2P56134 94 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 MAXP61244 160 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 ACTG1P63261 375 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 UBE2IP63279 158 aaKnown RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 DCDP81605 110 aaKnown RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 MPP1Q00013 466 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 ZNF33BQ06732 778 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.92□□□□□ -1.94
SPG11-225ENST00000561391 TBL3Q12788 808 aaKnown RBP2.92□□□□□ -1.94
SPG11-225ENST00000561391 RALGDSQ12967 914 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 LCP2Q13094 533 aa2.92□□□□□ -1.94
SPG11-225ENST00000561391 MAD2L1Q13257 205 aaPredicted RBP2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms