RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 P2RX1P51575 399 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GAS1P54826 345 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 DSCR4P56555 118 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 PCBP3P57721 371 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 GPR85P60893 370 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 COPZ1P61923 177 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 PPIAP62937 165 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 ALDH6A1Q02252 535 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 CBFBQ13951 182 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 LY6DQ14210 128 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 TRIM25Q14258 630 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 SLC10A1Q14973 349 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 TOMM20Q15388 145 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 MAPK11Q15759 364 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 HYAL4Q2M3T9 481 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GLYR1Q49A26 553 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 NADK2Q4G0N4 442 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 RPS26P11Q5JNZ5 115 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 RNF220Q5VTB9 566 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 DESI1Q6ICB0 168 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 DHFR2Q86XF0 187 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GRAMD2AQ8IUY3 354 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 C10orf67Q8IYJ2 551 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 C10orf111Q8N326 155 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 RNF148Q8N7C7 305 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 OR52E4Q8NGH9 312 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 TMEM234Q8WY98 164 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 PROX1Q92786 737 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 NSMCE2Q96MF7 247 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 RAB3IPQ96QF0 476 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 LRMDAQ9H2I8 198 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GORASP2Q9H8Y8 452 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 PROK2Q9HC23 129 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 EXOSC3Q9NQT5 275 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 TUBA8Q9NY65 449 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 FLRT3Q9NZU0 649 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 ACTR3BQ9P1U1 418 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 STOML1Q9UBI4 398 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 SAMD4AQ9UPU9 718 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 ZNF443Q9Y2A4 671 aaPredicted RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 SLC9A8Q9Y2E8 581 aa8.43□□□□□ -1.06
LDLR-210ENST00000559340 GCN1Q92616 2671 aaKnown RBP8.43□□□□□ -1.06
LDLR-210ENST00000559340 FLNBO75369 2602 aaKnown RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 TTLL8A6PVC2 850 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 G3V3Y1 287 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 LINC01387J3KSC0 135 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 TFECO14948 347 aaPredicted RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 CIB2O75838 187 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 TRAPPC6AO75865 159 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CYP7B1O75881 506 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 NUDT14O95848 222 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 LINGO3P0C6S8 592 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ZNF24P17028 368 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 GDF1P27539 372 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 SRD5A2P31213 254 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 EIF1P41567 113 aaKnown RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 KCNJ5P48544 419 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ZNF41P51814 821 aaPredicted RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 NCALDP61601 193 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 SELENOWP63302 87 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CEACAM7Q14002 265 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 MAPK14Q16539 360 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 FXNQ16595 210 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ZSCAN26Q16670 478 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 LRRC23Q53EV4 343 aaPredicted RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 KRTCAP3Q53RY4 240 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CYBRD1Q53TN4 286 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 MRPL2Q5T653 305 aaKnown RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 BICRALQ6AI39 1079 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 PCSK4Q6UW60 755 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 APOOLQ6UXV4 268 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 VRK2Q86Y07 508 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 FAM109AQ8N4B1 249 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 TMCO5AQ8N6Q1 288 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 GATSQ8NAP1 163 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 OR5W2Q8NH69 310 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 NTNG2Q96CW9 530 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ZG16BQ96DA0 208 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ARSGQ96EG1 525 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CADM1Q9BY67 442 aaKnown RBP8.42□□□□□ -1.06
LDLR-210ENST00000559340 HES7Q9BYE0 225 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 TTTY12Q9BZ98 90 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 DSN1Q9H410 356 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 GALNT9Q9HCQ5 603 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 DEPPQ9NTK1 212 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 EGFL7Q9UHF1 273 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 DKKL1Q9UK85 242 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CARD8Q9Y2G2 431 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 C15orf41Q9Y2V0 281 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 CSAG2Q9Y5P2 127 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 ESPL1Q14674 2120 aa8.42□□□□□ -1.06
LDLR-210ENST00000559340 LOC400499M0QZD8 3231 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 CDHR4A6H8M9 788 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 C2orf72A6NCS6 295 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 ANKUB1A6NFN9 424 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 CFAP73A6NFT4 308 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 FAAHO00519 579 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 AP3D1O14617 1153 aa8.41□□□□□ -1.06
LDLR-210ENST00000559340 GLSO94925 669 aaPredicted RBP8.41□□□□□ -1.06
LDLR-210ENST00000559340 LGI1O95970 557 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms