RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ASPGQ86U10 573 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 PEX5LQ8IYB4 626 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ALG8Q9BVK2 526 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 NDEL1Q9GZM8 345 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 SRMSQ9H3Y6 488 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 GALNT9Q9HCQ5 603 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 EXOGQ9Y2C4 368 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 DOCK8Q8NF50 2099 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 FAM240BA0A1B0GVZ2 78 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 FAM172BPA6NC97 362 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 J3QRE1 110 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 GNB5O14775 395 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 LYRM1O43325 122 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 AKR7A2O43488 359 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 PLOD3O60568 738 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 CTSBP07858 339 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 FAM157BP0CG42 384 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ACVR1BP36896 505 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ADPRHP54922 357 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 EEF1A1P68104 462 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 ABATP80404 500 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 RNASE12Q5GAN4 147 aaKnown RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 ZNF57Q68EA5 555 aaPredicted RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 SYCE2Q6PIF2 218 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ZNF614Q8N883 585 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 ZNF784Q8NCA9 323 aaPredicted RBP11.97□□□□□ -0.49
LDLR-207ENST00000558013 OR4K14Q8NGD5 310 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 OR51L1Q8NGJ5 315 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 FANK1Q8TC84 345 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 MOAP1Q96BY2 351 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 MS4A4EQ96PG1 132 aa11.97□□□□□ -0.49
LDLR-207ENST00000558013 A0A0B4J203 849 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 GXYLT2A0PJZ3 443 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 K7EQS6 105 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 RNF13O43567 381 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 HCRTR1O43613 425 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 CPNE3O75131 537 aaKnown RBP11.96□□□□□ -0.49
LDLR-207ENST00000558013 IFNA8P32881 189 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 TNFRSF17Q02223 184 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 EFR3AQ14156 821 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 OR1Q1Q15612 314 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 ZNF761Q86XN6 746 aaPredicted RBP11.96□□□□□ -0.49
LDLR-207ENST00000558013 OR2L13Q8N349 312 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 ARL14Q8N4G2 192 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 KISS1RQ969F8 398 aaPredicted RBP11.96□□□□□ -0.49
LDLR-207ENST00000558013 OR2A5Q96R48 311 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 TMEM43Q9BTV4 400 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 RAB11FIP5Q9BXF6 653 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 ISYNA1Q9NPH2 558 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 RBFOX1Q9NWB1 397 aaKnown RBP11.96□□□□□ -0.49
LDLR-207ENST00000558013 CLDND1Q9NY35 253 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 EXTL2Q9UBQ6 330 aa11.96□□□□□ -0.49
LDLR-207ENST00000558013 FGF17O60258 216 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 CT62P0C5K7 136 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 COL9A1P20849 921 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 ACTR1BP42025 376 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 ACTR1AP61163 376 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 TMEM196Q5HYL7 178 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 PRAMEF8Q5VWM4 474 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 PRAMEF7Q5VXH5 474 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 MTFR2Q6P444 385 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 NIPAL3Q6P499 406 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 SSX6Q7RTT6 188 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 ACBD7Q8N6N7 88 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 SLC37A3Q8NCC5 494 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 GALNT6Q8NCL4 622 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 SRFBP1Q8NEF9 429 aaKnown RBP11.96□□□□□ -0.5
LDLR-207ENST00000558013 PTCHD1Q96NR3 888 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 SLX1AQ9BQ83 275 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 IL21RQ9HBE5 538 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 MEPEQ9NQ76 525 aaPredicted RBP11.96□□□□□ -0.5
LDLR-207ENST00000558013 NLGN3Q9NZ94 848 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 PRKAG2Q9UGJ0 569 aa11.96□□□□□ -0.5
LDLR-207ENST00000558013 OR2W5A6NFC9 320 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 UNC119BA6NIH7 251 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 GPR89AB7ZAQ6 455 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 BHLHE40O14503 412 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 OR5F1O95221 314 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 APODP05090 189 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 EIF4EP06730 217 aaKnown RBP11.95□□□□□ -0.5
LDLR-207ENST00000558013 GPR89BP0CG08 455 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 SAGP10523 405 aaPredicted RBP11.95□□□□□ -0.5
LDLR-207ENST00000558013 ZNF24P17028 368 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 PAICSP22234 425 aaKnown RBP11.95□□□□□ -0.5
LDLR-207ENST00000558013 SRP9P49458 86 aaKnown RBP11.95□□□□□ -0.5
LDLR-207ENST00000558013 OR12D2P58182 307 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 LYPD8Q6UX82 237 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 DGAT2L6Q6ZPD8 337 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 FLVCR1-AS1Q8TAF5 88 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 GAL3ST3Q96A11 431 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 SARGQ9BW04 601 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 IFT27Q9BW83 186 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 MCUBQ9NWR8 336 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 BABAM2Q9NXR7 383 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 CALML5Q9NZT1 146 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 KLF15Q9UIH9 416 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 ZNF223Q9UK11 482 aaPredicted RBP11.95□□□□□ -0.5
LDLR-207ENST00000558013 ZMIZ1Q9ULJ6 1067 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 DAPP1Q9UN19 280 aa11.95□□□□□ -0.5
LDLR-207ENST00000558013 DAPL1A0PJW8 107 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms