RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 DNAJA4Q8WW22 397 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 HERVK_113Q902F9 699 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 CDS1Q92903 461 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PEX11GQ96HA9 241 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FERD3LQ96RJ6 166 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 GAL3ST1Q99999 423 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PDCD1LG2Q9BQ51 273 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SEC22CQ9BRL7 303 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 UBQLN3Q9H347 655 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 LRRN3Q9H3W5 708 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 TMEM74BQ9NUR3 256 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 KCNN3Q9UGI6 736 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 ICKQ9UPZ9 632 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SEC14L5O43304 696 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 AIFM1O95831 613 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 DHFRP00374 187 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SAGP10523 405 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 VIPR2P41587 438 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SMIM11AP58511 58 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 TAS2R38P59533 333 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SNTA1Q13424 505 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 PGGHGQ32M88 737 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SFRP5Q5T4F7 317 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 GDF7Q7Z4P5 450 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 AMZ2Q86W34 360 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 SLC39A11Q8N1S5 342 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 CPXM2Q8N436 756 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 KCT2Q8NC54 265 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 OR5W2Q8NH69 310 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 TIMP4Q99727 224 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 FGF20Q9NP95 211 aaPredicted RBP11.49□□□□□ -0.57
LDLR-205ENST00000557933 RDH8Q9NYR8 311 aa11.49□□□□□ -0.57
LDLR-205ENST00000557933 OTOL1A6NHN0 477 aaPredicted RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 PRKNO60260 465 aaPredicted RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 SIX6O95475 246 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 NTSP30990 170 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 VEGFCP49767 419 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 ZNF33BQ06732 778 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 RGS1Q08116 209 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 TSPAN31Q12999 210 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 HES5Q5TA89 166 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 OR4C11Q6IEV9 310 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 TMEM65Q6PI78 240 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 CD200R1LQ6Q8B3 271 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 Q6ZTK2 550 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 SPERTQ8NA61 448 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 KREMEN2Q8NCW0 462 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 OR2T4Q8NH00 348 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 RGMAQ96B86 450 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 METTL2AQ96IZ6 378 aaKnown RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 IFT27Q9BW83 186 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 OR52A5Q9H2C5 316 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 HEXA-AS1Q9H8Q6 139 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 CHURC1-FNTBB4DL54 471 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 ANXA3P12429 323 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 CSF2RAP15509 400 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 ATF1P18846 271 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 MAKP20794 623 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 AHCYP23526 432 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 PKLRP30613 574 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 BCL6P41182 706 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 CCR8P51685 355 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 SLC7A9P82251 487 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 FNDC3BQ53EP0 1204 aaKnown RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 MPP7Q5T2T1 576 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 PLPP4Q5VZY2 271 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 FAM198BQ6UWH4 519 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 DPPA4Q7L190 304 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 ACBD7Q8N6N7 88 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 OR5M3Q8NGP4 307 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 DIO2Q92813 273 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 CREB3L1Q96BA8 519 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 ZMYND19Q96E35 227 aaPredicted RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 SLC41A3Q96GZ6 507 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 MED18Q9BUE0 208 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 OR52D1Q9H346 318 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 GHITMQ9H3K2 345 aa11.48□□□□□ -0.57
LDLR-205ENST00000557933 MDC1Q14676 2089 aaKnown RBP11.48□□□□□ -0.57
LDLR-205ENST00000557933 ZNF106Q9H2Y7 1883 aaKnown RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 TCRBV16S1A1N1A0A5B0 115 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SNTNA6NMZ2 147 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 C4orf47A7E2U8 309 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 KDM4EB2RXH2 506 aaPredicted RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 PEX12O00623 359 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 RGS9O75916 674 aaPredicted RBP11.47□□□□□ -0.57
LDLR-205ENST00000557933 OR5F1O95221 314 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 LATS1O95835 1130 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 HLA-DQB1P01920 261 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 RAF1P04049 648 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ALDOBP05062 364 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ACSL1P33121 698 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 PTGS2P35354 604 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 THBS2P35442 1172 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 FXYD6P3P58550 94 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 KRT33BQ14525 404 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 TRAM2Q15035 370 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 SLC36A2Q495M3 483 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 FIGNL1Q6PIW4 674 aa11.47□□□□□ -0.57
LDLR-205ENST00000557933 ALKAL2Q6UX46 152 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms