RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PHOSPHO1Q8TCT1 267 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 ADAMTS15Q8TE58 950 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 OR5P2Q8WZ92 322 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 REXO5Q96IC2 774 aaKnown RBP13.11□□□□□ -0.31
SHMT2-235ENST00000557740 C18orf12Q96KH6 178 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 KLHL15Q96M94 604 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 NPAS1Q99742 590 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 ACTRT3Q9BYD9 372 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 HOXD1Q9GZZ0 328 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 PIGUQ9H490 435 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 GLRX2Q9NS18 164 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 GIN1Q9NXP7 522 aa13.11□□□□□ -0.31
SHMT2-235ENST00000557740 CFLARO15519 480 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 C6orf47O95873 294 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 TUBBP07437 444 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 PSMA4P25789 261 aaKnown RBP13.1□□□□□ -0.31
SHMT2-235ENST00000557740 ADSLP30566 484 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-235ENST00000557740 SFTPDP35247 375 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 SOAT1P35610 550 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 VSNL1P62760 191 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF117Q03924 483 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 FOXF1Q12946 379 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 ACKR1Q16570 336 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 C6orf136Q5SQH8 315 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 IL23RQ5VWK5 629 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 C20orf204Q6ZNR8 217 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 MTERF4Q7Z6M4 381 aaKnown RBP13.1□□□□□ -0.31
SHMT2-235ENST00000557740 LILRA2Q8N149 483 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 KRTCAP2Q8N6L1 136 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF614Q8N883 585 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 PPP1R14CQ8TAE6 165 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 POC1BQ8TC44 478 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 SFXN5Q8TD22 340 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 MOAP1Q96BY2 351 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 TUBGCP3Q96CW5 907 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 C3orf30Q96M34 536 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 PIP5K1AQ99755 562 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 CXorf36Q9H7Y0 433 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 TIGARQ9NQ88 270 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 PLSCR4Q9NRQ2 329 aa13.1□□□□□ -0.31
SHMT2-235ENST00000557740 NPIPA5A0A0B4J1W7 369 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 A0A0J9YW62 118 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 GJE1A6NN92 205 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 NPIPA7E9PJI5 369 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 GTPBP1O00178 669 aaKnown RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 SOX30O94993 753 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 INHBBP09529 407 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 LINGO3P0C6S8 592 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 PABPC4LP0CB38 370 aaKnown RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 NPIPA8P0DM63 369 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 PRPS1L1P21108 318 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 RNF144AP50876 292 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 SUMO3P55854 103 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 CARD18P57730 90 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 MAD2L1Q13257 205 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 BEX5Q5H9J7 111 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 GTF2IRD2BQ6EKJ0 949 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 BHLHB9Q6PI77 547 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 BEND4Q6ZU67 534 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 GTF2IRD2Q86UP8 949 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 KRTAP1-3Q8IUG1 177 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 LRRC75A-AS1Q8N1F1 130 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 TMCO5AQ8N6Q1 288 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 PSMA8Q8TAA3 256 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 OSTF1Q92882 214 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 MARK4Q96L34 752 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 HS3ST6Q96QI5 342 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 KLHDC3Q9BQ90 382 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 ROPN1BQ9BZX4 212 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 ZNF395Q9H8N7 513 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 ROPN1Q9HAT0 212 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-235ENST00000557740 ZDHHC2Q9UIJ5 367 aa13.09□□□□□ -0.31
SHMT2-235ENST00000557740 BPGMP07738 259 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 HOXB4P17483 251 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 IL11P20809 199 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 AGTR1P30556 359 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 ARRB2P32121 409 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 P2RX1P51575 399 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 CCR4P51679 360 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 ZNF239Q16600 458 aaKnown RBP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 KLHL26Q53HC5 615 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 STAC2Q6ZMT1 411 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 OR5AK3PQ8NH89 298 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 FBXO27Q8NI29 283 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 CPNE4Q96A23 557 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 COQ8BQ96D53 544 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 DUSP26Q9BV47 211 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 BHLHE41Q9C0J9 482 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 ACTR6Q9GZN1 396 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 C12orf49Q9H741 205 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 GPATCH2Q9NW75 528 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 CARD8Q9Y2G2 431 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 ACTL7BQ9Y614 415 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 GPC6Q9Y625 555 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 KCNE3Q9Y6H6 103 aa13.08□□□□□ -0.32
SHMT2-235ENST00000557740 NIPBLQ6KC79 2804 aaeCLIP13.08□□□□□ -0.32
SHMT2-235ENST00000557740 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-235ENST00000557740 ZNF195O14628 629 aa13.07□□□□□ -0.32
SHMT2-235ENST00000557740 OIP5O43482 229 aa13.07□□□□□ -0.32
SHMT2-235ENST00000557740 THBDP07204 575 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms