RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 MLF1P58340 268 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 AP3S2P59780 193 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF91Q05481 1191 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 SRSF11Q05519 484 aaKnown RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RUNX3Q13761 415 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF273Q14593 569 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 SHHQ15465 462 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PRSS53Q2L4Q9 553 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 LBHQ53QV2 105 aaPredicted RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 TMEM65Q6PI78 240 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 TMEM92Q6UXU6 159 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 EIF3MQ7L2H7 374 aaKnown RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ZZZ3Q8IYH5 903 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 MEIOBQ8N635 442 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 SLC15A4Q8N697 577 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 OR5AR1Q8NGP9 310 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 HM13Q8TCT9 377 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 CYGBQ8WWM9 190 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 FGF14Q92915 247 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PPP1R16AQ96I34 528 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF48Q96MX3 618 aaPredicted RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 IL17FQ96PD4 163 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PANX1Q96RD7 426 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 DPH2Q9BQC3 489 aaPredicted RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 RPP25Q9BUL9 199 aaKnown RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 AMBRA1Q9C0C7 1298 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 PLAGL1Q9UM63 463 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 SCML1Q9UN30 329 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 WIF1Q9Y5W5 379 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 CEPT1Q9Y6K0 416 aa4.77□□□□□ -1.65
TMEM260-210ENST00000556422 ARHGEF17Q96PE2 2063 aaPredicted RBP4.77□□□□□ -1.65
TMEM260-210ENST00000556422 FANCMQ8IYD8 2048 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MGAT4DA6NG13 374 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SAGE2PA6NJ88 616 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 LEUTXA8MZ59 168 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRR23D1E9PI22 279 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 LCMT2O60294 686 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 OR10H3O60404 316 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ANGPTL1O95841 491 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CYB5R3P00387 301 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GBAP04062 536 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRR23D2P0DMB1 279 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 COX7A2P14406 83 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF250P15622 560 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 NQO2P16083 231 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ENGP17813 658 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CPN2P22792 545 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TIA1P31483 386 aaKnown RBP eCLIP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF81P51508 661 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CDK3Q00526 305 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 BAMBIQ13145 260 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DAG1Q14118 895 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SLBPQ14493 270 aaKnown RBP eCLIP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PDGFRLQ15198 375 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CNN3Q15417 329 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RNFT1Q5M7Z0 435 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 HACD4Q5VWC8 232 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CAPN13Q6MZZ7 669 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ZNF544Q6NX49 715 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PNCKQ6P2M8 343 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 COMMD6Q7Z4G1 85 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SLC22A16Q86VW1 577 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 COMMD7Q86VX2 200 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PPP1R3BQ86XI6 285 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FAM129CQ86XR2 697 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SYT14Q8NB59 555 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PHYHIPQ92561 330 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FAM162AQ96A26 154 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 COQ8BQ96D53 544 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FAM120BQ96EK7 910 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MUS81Q96NY9 551 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MBOAT4Q96T53 435 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TPPP3Q9BW30 176 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 UGT2B28Q9BY64 529 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 UCK2Q9BZX2 261 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MAGIXQ9H6Y5 334 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SMURF2Q9HAU4 748 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DMRT3Q9NQL9 472 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MBNL1Q9NR56 388 aaKnown RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 TMEFF2Q9UIK5 374 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 LRP4O75096 1905 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF27A3QJZ7 478 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF25A6NGN4 478 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 IGLON5A6NGN9 336 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF26H0Y7S4 382 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 UBE2CO00762 179 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 MID1O15344 667 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DPM1O60762 260 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 GCM2O75603 506 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ANXA4P09525 319 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 ELK4P28324 431 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 FMO3P31513 532 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 DCTP40126 519 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 VEGFCP49767 419 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 CCR6P51684 374 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PNLIPRP1P54315 467 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 RGS8P57771 180 aaPredicted RBP4.76□□□□□ -1.65
TMEM260-210ENST00000556422 SPIN4Q56A73 249 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF5Q5TYX0 476 aa4.76□□□□□ -1.65
TMEM260-210ENST00000556422 PRAMEF6Q5VXH4 476 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms