RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 LGALS8O00214 317 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 ECI2O75521 394 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 WISP3O95389 354 aaPredicted RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 HBQ1P09105 142 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 ALOX5P09917 674 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 CLUP10909 449 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 PAX7P23759 505 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 CASQ1P31415 396 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 CAV2P51636 162 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 C16orf72Q14CZ0 275 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 HSP90B2PQ58FF3 399 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 TFDP3Q5H9I0 405 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 SLC10A5Q5PT55 438 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 C16orf87Q6PH81 154 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 WASH2PQ6VEQ5 465 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 SYT10Q6XYQ8 523 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 CCDC73Q6ZRK6 1079 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 OTUD6AQ7L8S5 288 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 LCA5Q86VQ0 697 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 MINDY2Q8NBR6 621 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 GIMAP1Q8WWP7 306 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 SLC13A3Q8WWT9 602 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 UPRTQ96BW1 309 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 CFAP53Q96M91 514 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 NOL4LQ96MY1 436 aaPredicted RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 PAIP2Q9BPZ3 127 aaKnown RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 CCDC94Q9BW85 323 aaPredicted RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 XPO4Q9C0E2 1151 aaKnown RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 GPN2Q9H9Y4 310 aaPredicted RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 DCAF16Q9NXF7 216 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 HOXC10Q9NYD6 342 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 ISY1Q9ULR0 285 aaKnown RBP2.03□□□□□ -2.08
VRK1-202ENST00000553683 TMCC3Q9ULS5 477 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 PLA2G4CQ9UP65 541 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 USP16Q9Y5T5 823 aa2.03□□□□□ -2.08
VRK1-202ENST00000553683 ARHGEF11O15085 1522 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ZCCHC6Q5VYS8 1495 aaKnown RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 LOC100131303A0A0U1RQF7 123 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 PSMB11A5LHX3 300 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 TUBAL3A6NHL2 446 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 PES1O00541 588 aaKnown RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 CASKO14936 926 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ADAM12O43184 909 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 STX11O75558 287 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SUPT7LO94864 414 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SNAPINO95295 136 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ANXA4P09525 319 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 OR8U8P0C7N1 319 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ZCCHC18P0CG32 403 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 CCDC192P0DO97 292 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 NEFHP12036 1026 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ATP5A1P25705 553 aaKnown RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 HTR1EP28566 365 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 CD1BP29016 333 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 AKT2P31751 481 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SFNP31947 248 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 HPDP32754 393 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 PLK1P53350 603 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ATXN3P54252 364 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 HMGN5P82970 282 aaKnown RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 RIPPLY1Q0D2K3 151 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SYPL1Q16563 259 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 CYB5R2Q6BCY4 276 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SCYL2Q6P3W7 929 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ZCCHC12Q6PEW1 402 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 WDR88Q6ZMY6 472 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 LPCAT2Q7L5N7 544 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ANKRD37Q7Z713 158 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 IQCF2Q8IXL9 164 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ZNF433Q8N7K0 673 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 ZBTB44Q8NCP5 570 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 GIPC3Q8TF64 312 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 TRUB1Q8WWH5 349 aaKnown RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 MYDGFQ969H8 173 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 SDSLQ96GA7 329 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 MCHR1Q99705 422 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ARHGDIGQ99819 225 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 TMEM121Q9BTD3 319 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ACAT2Q9BWD1 397 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 POLR3FQ9H1D9 316 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 CYTL1Q9NRR1 136 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 ANO10Q9NW15 660 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 C1orf123Q9NWV4 160 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP2.02□□□□□ -2.09
VRK1-202ENST00000553683 WRAP73Q9P2S5 460 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 IFT52Q9Y366 437 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 KNSTRNQ9Y448 316 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 AP4B1Q9Y6B7 739 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 THSD7BQ9C0I4 1608 aa2.02□□□□□ -2.09
VRK1-202ENST00000553683 BAZ1AQ9NRL2 1556 aaPredicted RBP2.02□□□□□ -2.09
VRK1-202ENST00000553683 A0A0J9YXY3 114 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 BOLA2-SMG1P6H3BVE0 249 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 MPHOSPH10O00566 681 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 CTAGE5O15320 804 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 BCAS2O75934 225 aaPredicted RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 AKR7A3O95154 331 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 SLC4A1P02730 911 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 IGHV4-34P06331 123 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 GSTT2P0CG29 244 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 GSTT2BP0CG30 244 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms