RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RPRD1BQ9NQG5 326 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 TBC1D29Q9UFV1 150 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CLEC4AQ9UMR7 237 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 MRPS2Q9Y399 296 aaKnown RBP6.97□□□□□ -1.29
LIMA1-213ENST00000552720 PCDHGB7Q9Y5F8 929 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 CACNA1IQ9P0X4 2223 aa6.97□□□□□ -1.29
LIMA1-213ENST00000552720 TRAV27A0A087WT01 109 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 A0A1W2PPK0 400 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PRR19A6NJB7 356 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 CHST10O43529 356 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 NDUFB5O43674 189 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 RNGTTO60942 597 aaKnown RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 IFI30P13284 250 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 ARSBP15848 533 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PAICSP22234 425 aaKnown RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 FCARP24071 287 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 TEAD1P28347 426 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 INPP1P49441 399 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 HCCSP53701 268 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 EEF1A1P68104 462 aaKnown RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 SLC3A1Q07837 685 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 RUNX2Q13950 521 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PRAMEF8Q5VWM4 474 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PRAMEF7Q5VXH5 474 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 CDC73Q6P1J9 531 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 FIGNL1Q6PIW4 674 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 SYT9Q86SS6 491 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 C17orf47Q8NEP4 570 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 OR10H4Q8NGA5 316 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 OR13C2Q8NGS9 318 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 OR14C36Q8NHC7 312 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 FANK1Q8TC84 345 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PTP4A1Q93096 173 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 ZC3HAV1LQ96H79 300 aaKnown RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 RIPOR3Q96MK2 946 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 SDF2Q99470 211 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 TIMM29Q9BSF4 260 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 HDHD2Q9H0R4 259 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 RSPH9Q9H1X1 276 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 CAPN10Q9HC96 672 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 SIDT1Q9NXL6 827 aaKnown RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 PRKAG2Q9UGJ0 569 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 DPP7Q9UHL4 492 aa6.96□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF223Q9UK11 482 aaPredicted RBP6.96□□□□□ -1.29
LIMA1-213ENST00000552720 WDR87Q6ZQQ6 2873 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ALPK2Q86TB3 2170 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 A0A0B4J203 849 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 POM121BA6NF01 834 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 GRXCR1A8MXD5 290 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 H0Y8X5 98 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 BHLHE40O14503 412 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CTSVO60911 334 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RFPL3O75679 317 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RGS9O75916 674 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 OR5F1O95221 314 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CMPK1P30085 196 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 IFNA8P32881 189 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 THBS2P35442 1172 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ACVR1BP36896 505 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RFX3P48380 749 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 GZMKP49863 264 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RPS7P62081 194 aaKnown RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 PLAURQ03405 335 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ACSM1Q08AH1 577 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RUNX3Q13761 415 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 GPR176Q14439 515 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 BTBD16Q32M84 506 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 SLC25A35Q3KQZ1 300 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CCDC58Q4VC31 144 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 MRPL2Q5T653 305 aaKnown RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 LAMTOR1Q6IAA8 161 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 MZT2BQ6NZ67 158 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 FBXO42Q6P3S6 717 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ZC3H14Q6PJT7 736 aaKnown RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 SSX6Q7RTT6 188 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ZAR1Q86SH2 424 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 AMIGO1Q86WK6 493 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 PAQR7Q86WK9 346 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 LRRC25Q8N386 305 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ACBD7Q8N6N7 88 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 SAMD12Q8N8I0 201 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM52Q8NDY8 209 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 OR51A7Q8NH64 312 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 MS4A4EQ96PG1 132 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 MARVELD1Q9BSK0 173 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ANKRD19PQ9H560 264 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 SLA2Q9H6Q3 261 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CD93Q9NPY3 652 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ENAMQ9NRM1 1142 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 ASB6Q9NWX5 421 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 BABAM2Q9NXR7 383 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CLDND1Q9NY35 253 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 NLGN3Q9NZ94 848 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CALML5Q9NZT1 146 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 KCMF1Q9P0J7 381 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 USP36Q9P275 1121 aaKnown RBP6.96□□□□□ -1.3
LIMA1-213ENST00000552720 POLHQ9Y253 713 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 RASD1Q9Y272 281 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 SLC17A4Q9Y2C5 497 aa6.96□□□□□ -1.3
LIMA1-213ENST00000552720 CACNA1CQ13936 2221 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms