RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF852Q6ZMS4 543 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 BEND4Q6ZU67 534 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF551Q7Z340 670 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 WDR5BQ86VZ2 330 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 OR6V1Q8N148 313 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ARL14Q8N4G2 192 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZNF485Q8NCK3 441 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 C11orf65Q8NCR3 313 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TM9SF4Q92544 642 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RGMAQ96B86 450 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SFXN2Q96NB2 322 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 OR4K3Q96R72 315 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PKP4Q99569 1192 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IFT27Q9BW83 186 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PINK1Q9BXM7 581 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MAGEH1Q9H213 219 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SEBOXQ9HB31 216 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 FNDC3AQ9Y2H6 1198 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 MYOFQ9NZM1 2061 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 OR2M5A3KFT3 312 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 TRABD2BA6NFA1 517 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MANBAO00462 879 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 GALR2O43603 387 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 HYAL3O43820 417 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 SERPIND1P05546 499 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CKMP06732 381 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MMP2P08253 660 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ADRA2AP08913 450 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 GABRA1P14867 456 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CTSSP25774 331 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PMELP40967 661 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 KIR3DL1P43629 444 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CHRNA4P43681 627 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IDH2P48735 452 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 HTR6P50406 440 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SMIM11AP58511 58 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 EFNB1P98172 346 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 GK2Q14410 553 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 ABRAXAS2Q15018 415 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ZMYND11Q15326 602 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PTCHD3Q3KNS1 767 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RNF212Q495C1 297 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IER5LQ5T953 404 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PAPD4Q6PIY7 484 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 DOK6Q6PKX4 331 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 PHACTR4Q8IZ21 702 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SPEM1Q8N4L4 309 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 KDF1Q8NAX2 398 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 OR6K3Q8NGY3 331 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 OR1S1Q8NH92 325 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 IGSF8Q969P0 613 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 RAD51AP1Q96B01 352 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ATP6V0BQ99437 205 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 ARHGAP9Q9BRR9 750 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 THAP7Q9BT49 309 aaPredicted RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 TWSG1Q9GZX9 223 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SMG9Q9H0W8 520 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 OSGEPL1Q9H4B0 414 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 SARS2Q9NP81 518 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 SLC35C2Q9NQQ7 365 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MED11Q9P086 117 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 USP36Q9P275 1121 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 MLXQ9UH92 298 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 CA5BQ9Y2D0 317 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 MRPS17Q9Y2R5 130 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 CARHSP1Q9Y2V2 147 aaKnown RBP4.92□□□□□ -1.62
USP28-213ENST00000544967 BDP1A6H8Y1 2624 aa4.92□□□□□ -1.62
USP28-213ENST00000544967 NPEPPSL1A6NEC2 478 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 MAGEB17A8MXT2 336 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 MCRIP1C9JLW8 97 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 IMPA2O14732 288 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SDC3O75056 442 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ULK1O75385 1050 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RDH16O75452 317 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 FBP1P09467 338 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 UBBP0CG47 229 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 UBCP0CG48 685 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 S100A11P31949 105 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 PITPNBP48739 271 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZNF140P52738 457 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 RAB4BP61018 213 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RPS27AP62979 156 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 UBA52P62987 128 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 PPP1R8Q12972 351 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 AGERQ15109 404 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SIRPB2Q5JXA9 342 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 BCL2L15Q5TBC7 163 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 ZNF57Q68EA5 555 aaPredicted RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 SUSD1Q6UWL2 747 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 C5orf46Q6UWT4 87 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 RHOUQ7L0Q8 258 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TRMT11Q7Z4G4 463 aaKnown RBP4.91□□□□□ -1.62
USP28-213ENST00000544967 TSPAN33Q86UF1 283 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 STX12Q86Y82 276 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 TMEM25Q86YD3 366 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 FTMTQ8N4E7 242 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 GPR26Q8NDV2 337 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 OR52P1PQ8NH57 321 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 HAVCR2Q8TDQ0 301 aa4.91□□□□□ -1.62
USP28-213ENST00000544967 SLC22A18Q96BI1 424 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms