RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	ZBED6CL	Q96FA7	236 aa	Predicted RBP	13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	KLHDC7B	Q96G42	594 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	PCBD2	Q9H0N5	130 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	PELI2	Q9HAT8	420 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC25A19	Q9HC21	320 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	GPR52	Q9Y2T5	361 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	AP1M2	Q9Y6Q5	423 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	COLEC10	Q9Y6Z7	277 aa		13.98	□□□□□ -0.17
CHFR-223	ENST00000544268	CACNA1I	Q9P0X4	2223 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	LINC01387	J3KSC0	135 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	TLX2	O43763	284 aa	Predicted RBP	13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC43A1	O75387	559 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	HMGN2	P05204	90 aa	Known RBP	13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	PEBP1	P30086	187 aa	Known RBP	13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	BUD31	P41223	144 aa	Predicted RBP	13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	CLDN20	P56880	219 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	LTB4R	Q15722	352 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	FLYWCH1	Q4VC44	716 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	IQCH	Q86VS3	1027 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	GJD3	Q8N144	294 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	TMEM203	Q969S6	136 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	DIRAS2	Q96HU8	199 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC35G5	Q96KT7	338 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	RACGAP1	Q9H0H5	632 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	MIXL1	Q9H2W2	232 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	EGLN3	Q9H6Z9	239 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	KIR3DX1	Q9H7L2	352 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	NEUROD4	Q9HD90	331 aa		13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	YARS2	Q9Y2Z4	477 aa	Known RBP	13.97	□□□□□ -0.17
CHFR-223	ENST00000544268	ZNF670-ZNF695	F2Z2N8	137 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	HCN1	O60741	890 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	RAF1	P04049	648 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	TPO	P07202	933 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	F3	P13726	295 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	RPL6	Q02878	288 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	MXD1	Q05195	221 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	ZNF91	Q05481	1191 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	PRDX1	Q06830	199 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	CLLU1	Q5K131	121 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	KRT77	Q7Z794	578 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	GHDC	Q8N2G8	530 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	GPBAR1	Q8TDU6	330 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	PATE1	Q8WXA2	126 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	MARVELD1	Q9BSK0	173 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	FUZ	Q9BT04	418 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	RAB11FIP5	Q9BXF6	653 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	DDX31	Q9H8H2	851 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	SLC35C2	Q9NQQ7	365 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	DIMT1	Q9UNQ2	313 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	CSNK1G3	Q9Y6M4	447 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268		K7ESF4	209 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	ORC5	O43913	435 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	DNAJB6	O75190	326 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	LGI1	O95970	557 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	WNT1	P04628	370 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	SCG5	P05408	212 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	ARSB	P15848	533 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	CD27	P26842	260 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	CXCL12	P48061	93 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	POU4F3	Q15319	338 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	SFTPA2	Q8IWL1	248 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	TBC1D19	Q8N5T2	526 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	KAT2A	Q92830	837 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	RBM14	Q96PK6	669 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	TSSK6	Q9BXA6	273 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	GHITM	Q9H3K2	345 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	TMEM74B	Q9NUR3	256 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	SEC14L4	Q9UDX3	406 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	IL20RA	Q9UHF4	553 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	ING4	Q9UNL4	249 aa		13.96	□□□□□ -0.17
CHFR-223	ENST00000544268	LSM2	Q9Y333	95 aa	Known RBP	13.96	□□□□□ -0.17
CHFR-223	ENST00000544268		A0A1W2PQL4	384 aa	Predicted RBP	13.95	□□□□□ -0.18
CHFR-223	ENST00000544268		A0A1W2PRG6	482 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	PPM1B	O75688	479 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	ADA	P00813	363 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	HLA-DQB1	P01920	261 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	FAM157B	P0CG42	384 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	CD79B	P40259	229 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	DMWD	Q09019	674 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	RIPPLY1	Q0D2K3	151 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	C1orf61	Q13536	156 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	COL28A1	Q2UY09	1125 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	KLHL12	Q53G59	568 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	LIPK	Q5VXJ0	399 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	GPR139	Q6DWJ6	353 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	TMEM81	Q6P7N7	255 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	ZBTB44	Q8NCP5	570 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	C19orf18	Q8NEA5	215 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	CADM4	Q8NFZ8	388 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	OR4E2	Q8NGC2	313 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	OR4K5	Q8NGD3	323 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	ZNF431	Q8TF32	576 aa	Predicted RBP	13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	LCN9	Q8WX39	176 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	MARC2	Q969Z3	335 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	FANCF	Q9NPI8	374 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	CNOT2	Q9NZN8	540 aa	Known RBP	13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	CLCA3P	Q9Y6N3	262 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	EML5	Q05BV3	1969 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	FAM240B	A0A1B0GVZ2	78 aa		13.95	□□□□□ -0.18
CHFR-223	ENST00000544268	RPS10-NUDT3	A0A1W2PQS6	291 aa		13.95	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms