RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	NSMCE2	Q96MF7	247 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	GNRHR2	Q96P88	292 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	TTTY12	Q9BZ98	90 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	LAT2	Q9GZY6	243 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	PTGES2	Q9H7Z7	377 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	DKKL1	Q9UK85	242 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	BAG5	Q9UL15	447 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	PKD1L2	Q7Z442	2459 aa		9.27	□□□□□ -0.93
CPSF7-221	ENST00000543545	LAMA5	O15230	3695 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	C17orf51	A8MQB3	221 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	TFEC	O14948	347 aa	Predicted RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ARPC2	O15144	300 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ATXN7	O15265	892 aa	Predicted RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	OIP5	O43482	229 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	TPST1	O60507	370 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CDC40	O60508	579 aa	Known RBP eCLIP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CBR3	O75828	277 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CIB2	O75838	187 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CRYAB	P02511	175 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	LINGO3	P0C6S8	592 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	UQCRB	P14927	111 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF24	P17028	368 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	RPS4Y1	P22090	263 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	GDF1	P27539	372 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	MSX1	P28360	303 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ADH7	P40394	386 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	P2RX1	P51575	399 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	EEF1A1	P68104	462 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ALDH6A1	Q02252	535 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF117	Q03924	483 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	FOXO1	Q12778	655 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	TRIM25	Q14258	630 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	RPUSD3	Q6P087	351 aa	Known RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	DHRS4L2	Q6PKH6	230 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	FAM180A	Q6UWF9	173 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CYP2R1	Q6VVX0	501 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF550	Q7Z398	422 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	SPPL2C	Q8IUH8	684 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZFP62	Q8NB50	900 aa	Predicted RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	TOR1AIP2	Q8NFQ8	470 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	OR10Q1	Q8NGQ4	319 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	RNF138	Q8WVD3	245 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	SLC39A7	Q92504	469 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	RNF145	Q96MT1	663 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	FRMD6	Q96NE9	622 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	PINK1	Q9BXM7	581 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	TRIM15	Q9C019	465 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	DEFB127	Q9H1M4	99 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	MMADHC	Q9H3L0	296 aa	Predicted RBP	9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	LDAH	Q9H6V9	325 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	EXO5	Q9H790	373 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	RPS6KA6	Q9UK32	745 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	FBXL2	Q9UKC9	423 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	SH3GLB1	Q9Y371	365 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545		V9GYQ6	96 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CFAP47	Q6ZTR5	3102 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	MGA	Q8IWI9	3026 aa		9.26	□□□□□ -0.93
CPSF7-221	ENST00000543545	CDHR4	A6H8M9	788 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	CFAP73	A6NFT4	308 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	LRRC3C	A6NJW4	275 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	EIF4E1B	A6NMX2	242 aa	Known RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	NPIPA5	E9PKD4	350 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	FRS3	O43559	492 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	BCAS1	O75363	584 aa	Predicted RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	FES	P07332	822 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	RFPL3S	P0C7P2	107 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	GKN3P	P0CG01	181 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	HK1	P19367	917 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	DPP4	P27487	766 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	SLC6A8	P48029	635 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	KCNJ5	P48544	419 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF41	P51814	821 aa	Predicted RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	RGS8	P57771	180 aa	Predicted RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	COPZ1	P61923	177 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	SELENOW	P63302	87 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	MS4A2	Q01362	244 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	TRAP1	Q12931	704 aa	Known RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	CBFB	Q13951	182 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	SLC10A1	Q14973	349 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	INA	Q16352	499 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	DUSP7	Q16829	419 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	GLIPR1L2	Q4G1C9	344 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	RNF220	Q5VTB9	566 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	FNDC7	Q5VTL7	733 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	PGM2L1	Q6PCE3	622 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	CBLN3	Q6UW01	205 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	ASRGL1	Q7L266	308 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	YTHDF3	Q7Z739	585 aa	Known RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	YRDC	Q86U90	279 aa	Known RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF440	Q8IYI8	595 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	EID3	Q8N140	333 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	TMEM251	Q8N6I4	163 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	LSM14A	Q8ND56	463 aa	Known RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	OR2M3	Q8NG83	312 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	OR5W2	Q8NH69	310 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	OR14L1P	Q8NHC6	308 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	ZNF563	Q8TA94	476 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	VANGL1	Q8TAA9	524 aa	Predicted RBP	9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	ARSG	Q96EG1	525 aa		9.25	□□□□□ -0.93
CPSF7-221	ENST00000543545	TAAR6	Q96RI8	345 aa		9.25	□□□□□ -0.93

Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms