RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SLC34A3Q8N130 599 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SMRP1Q8NCR6 262 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 WDR36Q8NI36 951 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 BBS10Q8TAM1 723 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ZNF480Q8WV37 535 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 RFT1Q96AA3 541 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TPD52L3Q96J77 140 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MND1Q9BWT6 205 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TEX101Q9BY14 249 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ZDHHC5Q9C0B5 715 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MS4A7Q9GZW8 240 aaPredicted RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SPNS1Q9H2V7 528 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 CDCP1Q9H5V8 836 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 REEP1Q9H902 201 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MBNL1Q9NR56 388 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MS4A12Q9NXJ0 267 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC25A37Q9NYZ2 338 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MGAT4BQ9UQ53 548 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 BAIAP2Q9UQB8 552 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SH2B3Q9UQQ2 575 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 A0A1W2PP55 124 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GNG14A0A1W2PPG7 69 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 A0A1W2PQF6 199 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SIGLEC6O43699 453 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GATBO75879 557 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 PCCBP05166 539 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SNRNP70P08621 437 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 BCKDHAP12694 445 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 HOXB9P17482 250 aaPredicted RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 FPR1P21462 350 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TEAD1P28347 426 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 BMP8BP34820 402 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 STAT5AP42229 794 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 RABIFP47224 123 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 OMPP47874 163 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SMSP52788 366 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 RRAS2P62070 204 aaPredicted RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TRA2BP62995 288 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 HTD2P86397 168 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ZP2Q05996 745 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MAD2L1Q13257 205 aaPredicted RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 NAE1Q13564 534 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GANABQ14697 944 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 HSD17B12Q53GQ0 312 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TMEM196Q5HYL7 178 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 FRG2Q64ET8 278 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 NPSR1Q6W5P4 371 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MTSS1LQ765P7 747 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 RNF130Q86XS8 419 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TDHQ8IZJ6 230 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 RNF175Q8N4F7 328 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 KRTCAP2Q8N6L1 136 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GDPD1Q8N9F7 314 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ATP6V1C2Q8NEY4 427 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SELENOMQ8WWX9 145 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 NXPE2Q96DL1 559 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 C14orf144Q96I85 54 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 C10orf90Q96M02 699 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 FRG2BQ96QU4 278 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SIGLEC11Q96RL6 698 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SGPP1Q9BX95 441 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 DPEP2Q9H4A9 486 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 DDX31Q9H8H2 851 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SDHAF2Q9NX18 166 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC23A2Q9UGH3 650 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ING4Q9UNL4 249 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 A0A075B6Q4 140 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 METTL21EPA6NDL7 271 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MGAT4DA6NG13 374 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 H7C2Y5 167 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SMAD9O15198 467 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 CRATP43155 626 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 DGKEP52429 567 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 LARS2Q15031 903 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GRK1Q15835 563 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SNAPC1Q16533 368 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 GRHL2Q6ISB3 625 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MSRB3Q8IXL7 192 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 NANOGP1Q8N7R0 232 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 OR9A2Q8NGT5 310 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 OR14C36Q8NHC7 312 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 ADAMTS18Q8TE60 1221 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SFT2D1Q8WV19 159 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TMEM203Q969S6 136 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 CMTM7Q96FZ5 175 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 APIPQ96GX9 242 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 TEFMQ96QE5 360 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 OR52E6Q96RD3 313 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC6A13Q9NSD5 602 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 CLDND1Q9NY35 253 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 NDRG2Q9UN36 371 aaKnown RBP7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 MMACHCQ9Y4U1 282 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 KLK4Q9Y5K2 254 aa7.47□□□□□ -1.21
PDLIM5-221ENST00000542407 EYSQ5T1H1 3165 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 SMAD7O15105 426 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 PLRG1O43660 514 aaKnown RBP7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 CDRT1O95170 752 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 EGFP01133 1207 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 FABP3P05413 133 aa7.46□□□□□ -1.21
PDLIM5-221ENST00000542407 SLC2A2P11168 524 aaPredicted RBP7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms