RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CCDC163A0A0D9SF12 145 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 C2orf78A6NCI8 922 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 HSBP1L1C9JCN9 74 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ANHXE9PGG2 379 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ITGB1BP1O14713 200 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 HSPA12AO43301 675 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 MED7O43513 233 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PRAF2O60831 178 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 FARS2O95363 451 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 JCHAINP01591 159 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 LGALS2P05162 132 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 MTHFD2P13995 350 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 RAB5AP20339 215 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 OR1E1P30953 314 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 FGF9P31371 208 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 AKT1P31749 480 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PRKXP51817 358 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF140P52738 457 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 MVDP53602 400 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 STXBP1P61764 594 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 OC90Q02509 493 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PPIGQ13427 754 aaKnown RBP eCLIP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 TDGQ13569 410 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 FAM46CQ5VWP2 391 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 C18orf63Q68DL7 685 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SLC25A24Q6NUK1 477 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF574Q6ZN55 896 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF551Q7Z340 670 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 CTU1Q7Z7A3 348 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 UNC93AQ86WB7 457 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 FAM71CQ8NEG0 241 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 DNAAF1Q8NEP3 725 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SH3RF2Q8TEC5 729 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 DUSP19Q8WTR2 217 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 XAGE5Q8WWM1 108 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 NFKBIZQ9BYH8 718 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 LAT2Q9GZY6 243 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 WDR13Q9H1Z4 485 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 DNAJC27Q9NZQ0 273 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF69Q9UC07 566 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SLC2A6Q9UGQ3 507 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF225Q9UK10 706 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 GPR55Q9Y2T6 319 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 CYTIPO60759 359 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PIGRP01833 764 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 THBS1P07996 1170 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 HMBSP08397 361 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 GKN3PP0CG01 181 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF286BP0CG31 522 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 TMIGD3P0DMS9 266 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 CPN1P15169 458 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 MGMTP16455 207 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 MAPK3P27361 379 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 CERS1P27544 350 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 RBMS1P29558 406 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 RAD52P43351 418 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 RFX3P48380 749 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 EPHB3P54753 998 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 HSD11B2P80365 405 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PTGES3Q15185 160 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PLEKHN1Q494U1 663 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SCGB2B2Q4G0G5 96 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 AFMIDQ63HM1 303 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 GDPD4Q6W3E5 623 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 Q6ZSR9 355 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PLPPR4Q7Z2D5 763 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 OAFQ86UD1 273 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PIM3Q86V86 326 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 RANBP3LQ86VV4 465 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 PYROXD2Q8N2H3 581 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 OR51S1Q8NGJ8 323 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SLC6A18Q96N87 628 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 CNTNAP3BQ96NU0 1288 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 OR1F2PQ96R84 312 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 C16orf70Q9BSU1 422 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SNHG12Q9BXW3 62 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 HAPLN2Q9GZV7 340 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 SARS2Q9NP81 518 aaKnown RBP8.84□□□□□ -0.99
CLIP1-214ENST00000540539 TREM1Q9NP99 234 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 C1GALT1Q9NS00 363 aa8.84□□□□□ -0.99
CLIP1-214ENST00000540539 ZNF705EA8MWA4 302 aaPredicted RBP8.83□□□□□ -1
CLIP1-214ENST00000540539 SUV39H1O43463 412 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 RPA2P15927 270 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 CNR2P34972 360 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 AHRP35869 848 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 AP3S2P59780 193 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 DGCR2P98153 550 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 ITKQ08881 620 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 SERINC3Q13530 473 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 SEZ6Q53EL9 994 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 SPANXN4Q5MJ08 99 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 TMEM164Q5U3C3 297 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 NSUN5P2Q63ZY6 315 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 PTRHD1Q6GMV3 140 aaKnown RBP8.83□□□□□ -1
CLIP1-214ENST00000540539 RAB12Q6IQ22 244 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 PSRC1Q6PGN9 363 aaPredicted RBP8.83□□□□□ -1
CLIP1-214ENST00000540539 CAMKMTQ7Z624 323 aa8.83□□□□□ -1
CLIP1-214ENST00000540539 CCDC117Q8IWD4 279 aaPredicted RBP8.83□□□□□ -1
CLIP1-214ENST00000540539 RYBPQ8N488 228 aaPredicted RBP8.83□□□□□ -1
CLIP1-214ENST00000540539 BEND2Q8NDZ0 799 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms