RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 SERPINB4P48594 390 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 MANFP55145 182 aaKnown RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 DNAJB13P59910 316 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 P2RY6Q15077 328 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 TAB1Q15750 504 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 CD226Q15762 336 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 ZNF672Q499Z4 452 aaPredicted RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 ZNF385BQ569K4 471 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 RNF165Q6ZSG1 346 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 TRMT10CQ7L0Y3 403 aaKnown RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 MTERF4Q7Z6M4 381 aaKnown RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 TDRPQ86YL5 185 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 MAPK1IP1LQ8NDC0 245 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 B4GALNT2Q8NHY0 566 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SMAP2Q8WU79 429 aaPredicted RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 ROBO4Q8WZ75 1007 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SH3YL1Q96HL8 342 aaPredicted RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 CCT7Q99832 543 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SRXN1Q9BYN0 137 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 SLCO5A1Q9H2Y9 848 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 REEP4Q9H6H4 257 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 TIGARQ9NQ88 270 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 C1orf109Q9NX04 203 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 MAGED1Q9Y5V3 778 aaPredicted RBP12.07□□□□□ -0.48
SS18-204ENST00000539244 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.07□□□□□ -0.484e-6■■■□□ 17.6
SS18-204ENST00000539244 MXRA5Q9NR99 2828 aa12.07□□□□□ -0.48
SS18-204ENST00000539244 GJE1A6NN92 205 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 KIF2AO00139 706 aaPredicted RBP12.06□□□□□ -0.48
SS18-204ENST00000539244 SCDO00767 359 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 RIPK2O43353 540 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 CD5LO43866 347 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 EFNA2O43921 213 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 GLRA3O75311 464 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PROCP04070 461 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 MYL2P10916 166 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 HPGDP15428 266 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 IL32P24001 234 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PRIM2P49643 509 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PRKAG1P54619 331 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 ITGADQ13349 1161 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PGGHGQ32M88 737 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 ANKRD26P1Q6NSI1 321 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 FCRLAQ7L513 359 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 NUFIP2Q7Z417 695 aaKnown RBP12.06□□□□□ -0.48
SS18-204ENST00000539244 HIPK1Q86Z02 1210 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 TUSC5Q8IXB3 177 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 FBXO30Q8TB52 745 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PIWIL2Q8TC59 973 aaKnown RBP12.06□□□□□ -0.48
SS18-204ENST00000539244 PPCDCQ96CD2 204 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 REXO5Q96IC2 774 aaKnown RBP12.06□□□□□ -0.48
SS18-204ENST00000539244 STACQ99469 402 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 POTEKPQ9BYX7 375 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 TRIM2Q9C040 744 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 COQ10BQ9H8M1 238 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 BCO1Q9HAY6 547 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 DUSP22Q9NRW4 184 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 GIN1Q9NXP7 522 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 PSMC3IPQ9P2W1 217 aaPredicted RBP12.06□□□□□ -0.48
SS18-204ENST00000539244 LIPT1Q9Y234 373 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 ACTL7BQ9Y614 415 aa12.06□□□□□ -0.48
SS18-204ENST00000539244 A0A1W2PP18 115 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SLC28A1O00337 649 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 CLOCKO15516 846 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 CRCPO75575 148 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 URI1O94763 535 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 PRKD3O94806 890 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 IGHV4-39P01824 125 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 TP53P04637 393 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 YES1P07947 543 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 ALOX5P09917 674 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SDC1P18827 310 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SFTPDP35247 375 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 ACVR1BP36896 505 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 CDKN1AP38936 164 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SUMO3P55854 103 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 POU6F2P78424 691 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 ZNF117Q03924 483 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 BSPH1Q075Z2 132 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 FOXF1Q12946 379 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 MLC1Q15049 377 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 TSC22D1Q15714 1073 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 PODNL1Q6PEZ8 512 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 Q6ZSR9 355 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 DTX2Q86UW9 622 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SLC43A2Q8N370 569 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 COX18Q8N8Q8 333 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 BANPQ8N9N5 519 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 KBTBD8Q8NFY9 601 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 NEUROG1Q92886 237 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 KISS1RQ969F8 398 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 GTPBP3Q969Y2 492 aaKnown RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 MTERF3Q96E29 417 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 C16orf58Q96GQ5 468 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 BTBD2Q9BX70 525 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 L2HGDHQ9H9P8 463 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 SIRT3Q9NTG7 399 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 SH3BP4Q9P0V3 963 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 ICAM5Q9UMF0 924 aa12.05□□□□□ -0.48
SS18-204ENST00000539244 GPC6Q9Y625 555 aaPredicted RBP12.05□□□□□ -0.48
SS18-204ENST00000539244 DPRXA6NFQ7 191 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms