RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 HS6ST2Q96MM7 605 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 VSTM2LQ96N03 204 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 ZNF285Q96NJ3 590 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 JAM3Q9BX67 310 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 PRO3102Q9H379 93 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 EVA1AQ9H8M9 152 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 UCK1Q9HA47 277 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 MEPEQ9NQ76 525 aaPredicted RBP12.97□□□□□ -0.33
LIMK1-208ENST00000538333 SNTG1Q9NSN8 517 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 C14orf105Q9NVL8 296 aa12.97□□□□□ -0.33
LIMK1-208ENST00000538333 A0A0B4J2E0 115 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 IQCMA0A1B0GVH7 501 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 A0A1B0GX12 115 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 A0A1W2PR77 199 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 J3QRE1 110 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 SOCS6O14544 535 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 ZNF217O75362 1048 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 NME1P15531 152 aaKnown RBP12.96□□□□□ -0.33
LIMK1-208ENST00000538333 TGM4P49221 684 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 FZD5Q13467 585 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 DSG2Q14126 1118 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 LRIT3Q3SXY7 679 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 GARNL3Q5VVW2 1013 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 C22orf42Q6IC83 251 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 CD200R1LQ6Q8B3 271 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 QSOX2Q6ZRP7 698 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 CXXC5Q7LFL8 322 aaKnown RBP12.96□□□□□ -0.33
LIMK1-208ENST00000538333 LNX2Q8N448 690 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 UFD1Q92890 307 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 PEX11GQ96HA9 241 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 ZNF559Q9BR84 538 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 SLC30A2Q9BRI3 323 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 ZNF426Q9BUY5 554 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 FLRT3Q9NZU0 649 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 DTX4Q9Y2E6 619 aa12.96□□□□□ -0.33
LIMK1-208ENST00000538333 CAB39Q9Y376 341 aaPredicted RBP12.96□□□□□ -0.33
LIMK1-208ENST00000538333 FAM183AA6NL82 134 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 LOC110117498-PIK3R3F6TDL0 507 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 CTNSO60931 367 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 RFPL3O75679 317 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 SSTR4P31391 388 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 ACAA2P42765 397 aaKnown RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 SEPHS1P49903 392 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 CTBP2P56545 445 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 MAT1AQ00266 395 aaKnown RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 ACSM1Q08AH1 577 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 SMAD4Q13485 552 aaKnown RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 FAM53BQ14153 422 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 ELOCQ15369 112 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 AMZ1Q400G9 498 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 THSD4Q6ZMP0 1018 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 ASB15Q8WXK1 588 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 RIT1Q92963 219 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 BPIFA2Q96DR5 249 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 TCTN2Q96GX1 697 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 WDFY2Q96P53 400 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 PHF7Q9BWX1 381 aaPredicted RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 TTYH1Q9H313 450 aaPredicted RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 FN3KQ9H479 309 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 LMAN1LQ9HAT1 526 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 CAPN10Q9HC96 672 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 CPNE5Q9HCH3 593 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 ERVK13-1Q9NX77 482 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 DNAJB12Q9NXW2 375 aaKnown RBP12.96□□□□□ -0.34
LIMK1-208ENST00000538333 SIGLEC7Q9Y286 467 aa12.96□□□□□ -0.34
LIMK1-208ENST00000538333 SLC35F4A4IF30 521 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 LILRA5A6NI73 299 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 CHP2O43745 196 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 CDC123O75794 336 aaPredicted RBP12.95□□□□□ -0.34
LIMK1-208ENST00000538333 CDRT1O95170 752 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 NSA2O95478 260 aaKnown RBP12.95□□□□□ -0.34
LIMK1-208ENST00000538333 PROS1P07225 676 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 IGFBP4P22692 258 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 CD27P26842 260 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 FGF9P31371 208 aaPredicted RBP12.95□□□□□ -0.34
LIMK1-208ENST00000538333 GABRA5P31644 462 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 RFX3P48380 749 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 PSPHP78330 225 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 NIPAL3Q6P499 406 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 NPSR1Q6W5P4 371 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 GID4Q8IVV7 300 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 ZNF595Q8IYB9 648 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 SIRT6Q8N6T7 355 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 POC5Q8NA72 575 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 PSD4Q8NDX1 1056 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 OR52L1Q8NGH7 329 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 OR13C2Q8NGS9 318 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 RBM18Q96H35 190 aaKnown RBP12.95□□□□□ -0.34
LIMK1-208ENST00000538333 TM9SF2Q99805 663 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 MED18Q9BUE0 208 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 TMEM27Q9HBJ8 222 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 COLQQ9Y215 455 aaPredicted RBP12.95□□□□□ -0.34
LIMK1-208ENST00000538333 TRAPPC4Q9Y296 219 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 TMEM5Q9Y2B1 443 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 MED31Q9Y3C7 131 aa12.95□□□□□ -0.34
LIMK1-208ENST00000538333 A0A1B0GWA3 101 aa12.94□□□□□ -0.34
LIMK1-208ENST00000538333 BLACEA4D250 179 aa12.94□□□□□ -0.34
LIMK1-208ENST00000538333 METTL12A8MUP2 240 aa12.94□□□□□ -0.34
LIMK1-208ENST00000538333 NPIPB9F8W1W9 429 aa12.94□□□□□ -0.34
LIMK1-208ENST00000538333 SLC30A4O14863 429 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms