RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 IGHV1-2P23083 117 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 LSP1P33241 339 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 MDH1P40925 334 aaKnown RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 SLC1A3P43003 542 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 GPR6P46095 362 aaPredicted RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 MAGOHP61326 146 aaKnown RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 TIAL1Q01085 375 aaKnown RBP eCLIP8.01□□□□□ -1.13
USP28-205ENST00000537706 DUSP2Q05923 314 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 DDX39BQ13838 428 aaKnown RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 ZNF362Q5T0B9 420 aaPredicted RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 MRM1Q6IN84 353 aaKnown RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 FAM45BPQ6NSW5 357 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 PRUNE1Q86TP1 453 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 NUDT13Q86X67 352 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 UBE2J2Q8N2K1 259 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 ZNF433Q8N7K0 673 aaPredicted RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 SIGLECL1Q8N7X8 197 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 CDYL2Q8N8U2 506 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 C2CD4AQ8NCU7 369 aaPredicted RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 FAM45AQ8TCE6 357 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 DUSP19Q8WTR2 217 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 KLHL15Q96M94 604 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 SLC17A6Q9P2U8 582 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 CTNNAL1Q9UBT7 734 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 PRSS50Q9UI38 385 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 MRTO4Q9UKD2 239 aaKnown RBP8.01□□□□□ -1.13
USP28-205ENST00000537706 VDAC3Q9Y277 283 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 AMDHD2Q9Y303 409 aa8.01□□□□□ -1.13
USP28-205ENST00000537706 DNAJC9-AS1A6NH13 148 aa8□□□□□ -1.13
USP28-205ENST00000537706 SLC22A31A6NKX4 558 aa8□□□□□ -1.13
USP28-205ENST00000537706 WASHC1A8K0Z3 465 aa8□□□□□ -1.13
USP28-205ENST00000537706 PLPP1O14494 284 aa8□□□□□ -1.13
USP28-205ENST00000537706 GUCY1B2O75343 617 aa8□□□□□ -1.13
USP28-205ENST00000537706 STK16O75716 305 aa8□□□□□ -1.13
USP28-205ENST00000537706 RNASE1P07998 156 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 GAAP10253 952 aa8□□□□□ -1.13
USP28-205ENST00000537706 CSNK2A2P19784 350 aaPredicted RBP8□□□□□ -1.13
USP28-205ENST00000537706 MDKP21741 143 aaPredicted RBP8□□□□□ -1.13
USP28-205ENST00000537706 ZNF41P51814 821 aaPredicted RBP8□□□□□ -1.13
USP28-205ENST00000537706 MYBPC1Q00872 1141 aa8□□□□□ -1.13
USP28-205ENST00000537706 GUCY1A3Q02108 690 aa8□□□□□ -1.13
USP28-205ENST00000537706 C17orf67Q0P5P2 114 aa8□□□□□ -1.13
USP28-205ENST00000537706 RIN1Q13671 783 aa8□□□□□ -1.13
USP28-205ENST00000537706 TMEM44Q2T9K0 475 aa8□□□□□ -1.13
USP28-205ENST00000537706 PRICKLE4Q2TBC4 344 aa8□□□□□ -1.13
USP28-205ENST00000537706 HSP90AA5PQ58FG0 334 aa8□□□□□ -1.13
USP28-205ENST00000537706 TNFAIP8L3Q5GJ75 292 aa8□□□□□ -1.13
USP28-205ENST00000537706 ZNF311Q5JNZ3 666 aa8□□□□□ -1.13
USP28-205ENST00000537706 RBM20Q5T481 1227 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 RNASEH2BQ5TBB1 312 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 FAM111BQ6SJ93 734 aa8□□□□□ -1.13
USP28-205ENST00000537706 DOK3Q7L591 496 aa8□□□□□ -1.13
USP28-205ENST00000537706 LAS2Q8IYD9 372 aa8□□□□□ -1.13
USP28-205ENST00000537706 GTPBP8Q8N3Z3 284 aaPredicted RBP8□□□□□ -1.13
USP28-205ENST00000537706 CLDND2Q8NHS1 167 aa8□□□□□ -1.13
USP28-205ENST00000537706 EPS8L3Q8TE67 593 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 EFHD2Q96C19 240 aaPredicted RBP8□□□□□ -1.13
USP28-205ENST00000537706 RBM4BQ9BQ04 359 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 KRTAP17-1Q9BYP8 105 aa8□□□□□ -1.13
USP28-205ENST00000537706 TBL1XR1Q9BZK7 514 aa8□□□□□ -1.13
USP28-205ENST00000537706 DYNLRB1Q9NP97 96 aa8□□□□□ -1.13
USP28-205ENST00000537706 NINJ2Q9NZG7 142 aa8□□□□□ -1.13
USP28-205ENST00000537706 MAT2BQ9NZL9 334 aa8□□□□□ -1.13
USP28-205ENST00000537706 PSME2Q9UL46 239 aa8□□□□□ -1.13
USP28-205ENST00000537706 TRAF6Q9Y4K3 522 aa8□□□□□ -1.13
USP28-205ENST00000537706 KMT2CQ8NEZ4 4911 aaKnown RBP8□□□□□ -1.13
USP28-205ENST00000537706 A0A0A6YYD5 115 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 A0A0J9YW62 118 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 NCF1BA6NI72 391 aaPredicted RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 NCF1CA8MVU1 366 aaPredicted RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 SHISA8B8ZZ34 492 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 ATP6V1G2-DDX39BF2Z307 99 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 PGRMC2O15173 223 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 RGS14O43566 566 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 OPN1LWP04000 364 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 S100BP04271 92 aaPredicted RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 ZSCAN5DPP0CG00 497 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 NCF1P14598 390 aaPredicted RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 PTX3P26022 381 aaPredicted RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 FEN1P39748 380 aaKnown RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 PIK3CBP42338 1070 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 IL1RL1Q01638 556 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 ZP4Q12836 540 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 RYR3Q15413 4870 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 EFNB3Q15768 340 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 CPTPQ5TA50 214 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 LEG1Q6P5S2 330 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 GTF3AQ92664 365 aaKnown RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 C1QTNF6Q9BXI9 259 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 DDX31Q9H8H2 851 aaKnown RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 SAYSD1Q9NPB0 183 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 FAM120CQ9NX05 1096 aaKnown RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 VWA7Q9Y334 891 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 LOC100653049A0A140TA62 436 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 ZCWPW2A0A1B0GU75 182 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 TMPRSS11DO60235 418 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 EEDO75530 441 aaKnown RBP7.99□□□□□ -1.13
USP28-205ENST00000537706 KRT34O76011 436 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 WNT11O96014 354 aa7.99□□□□□ -1.13
USP28-205ENST00000537706 ATP1B1P05026 303 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms