RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	ARSK	Q6UWY0	536 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	FRRS1	Q6ZNA5	592 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PNPT1	Q8TCS8	783 aa	Known RBP	13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PHOSPHO1	Q8TCT1	267 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	RND1	Q92730	232 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	ROPN1L	Q96C74	230 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TRNT1	Q96Q11	434 aa	Known RBP	13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PIGQ	Q9BRB3	760 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TMEM120A	Q9BXJ8	343 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PAIP1	Q9H074	479 aa	Known RBP	13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	TPT1P8	Q9HAU6	139 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	ALKBH4	Q9NXW9	302 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	KCNE5	Q9UJ90	142 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	CAMK2A	Q9UQM7	478 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	LIPT1	Q9Y234	373 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	WDR45	Q9Y484	360 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	PCNX1	Q96RV3	2341 aa		13.62	□□□□□ -0.23
CPSF1-208	ENST00000532560	MED12	Q93074	2177 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	PRAMEF27	A3QJZ7	478 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	C7orf72	A4D263	438 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	SERINC4	A6NH21	518 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	CYSRT1	A8MQ03	144 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	FAM47E-STBD1	D6RA91	191 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	HCRTR2	O43614	444 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	UGT2B17	O75795	530 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	NQO1	P15559	274 aa	Known RBP	13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF708	P17019	499 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	TCEA1	P23193	301 aa	Known RBP	13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	CLDN18	P56856	261 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	NCALD	P61601	193 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ELF3	P78545	371 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	PMPCA	Q10713	525 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	GPR68	Q15743	365 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	RIPPLY2	Q5TAB7	128 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	OLIG3	Q7RTU3	272 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	LACC1	Q8IV20	430 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF619	Q8N2I2	560 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF614	Q8N883	585 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	B4GALNT2	Q8NHY0	566 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZPLD1	Q8TCW7	415 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ASB5	Q8WWX0	329 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZBTB8A	Q96BR9	441 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	SDCCAG3	Q96C92	435 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	AURKB	Q96GD4	344 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	SH3YL1	Q96HL8	342 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	MRGBP	Q9NV56	204 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	COQ3	Q9NZJ6	369 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	MKLN1	Q9UL63	735 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	PCDHB14	Q9Y5E9	798 aa		13.61	□□□□□ -0.23
CPSF1-208	ENST00000532560	CENPVL1	A0A0U1RR11	272 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560		A0A1W2PP18	115 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	OR2M5	A3KFT3	312 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	CD8B2	A6NJW9	211 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560		H0Y3Z8	333 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	GMFG	O60234	142 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	H6PD	O95479	791 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	CLDN14	O95500	239 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	EPPIN	O95925	133 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	CHRM4	P08173	479 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	UBL4A	P11441	157 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	PEPD	P12955	493 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	POU3F2	P20265	443 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	CHRNB4	P30926	498 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ADH7	P40394	386 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	P2RX1	P51575	399 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF41	P51814	821 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	FADD	Q13158	208 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	BCL2A1	Q16548	175 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	PLPPR5	Q32ZL2	321 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	GPAT3	Q53EU6	434 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	NSUN5P2	Q63ZY6	315 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	LRRC74B	Q6ZQY2	392 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	SEM1	Q6ZVN7	128 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ADGRE4P	Q86SQ3	457 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ANKFN1	Q8N957	763 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	TOR1AIP2	Q8NFQ8	470 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	TSPEAR	Q8WU66	669 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	LRRC37B	Q96QE4	947 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	SLC38A1	Q9H2H9	487 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	RAD21L1	Q9H4I0	556 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	PCNX3	Q9H6A9	2034 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	SAR1A	Q9NR31	198 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	MED17	Q9NVC6	651 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	THUMPD1	Q9NXG2	353 aa	Known RBP	13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	P2RX2	Q9UBL9	471 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ICAM5	Q9UMF0	924 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	RNF6	Q9Y252	685 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	VDAC3	Q9Y277	283 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	L3MBTL1	Q9Y468	752 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	GMEB1	Q9Y692	573 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	ARHGAP21	Q5T5U3	1957 aa		13.6	□□□□□ -0.23
CPSF1-208	ENST00000532560	TRBV5-3	A0A0A0MS03	114 aa		13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	GTPBP1	O00178	669 aa	Known RBP	13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	ZNF264	O43296	627 aa		13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	OIP5	O43482	229 aa		13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	EIF4E2	O60573	245 aa	Known RBP	13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	ETFA	P13804	333 aa		13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	CD1E	P15812	388 aa		13.59	□□□□□ -0.23
CPSF1-208	ENST00000532560	CRAT	P43155	626 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 51 ms