RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 LIME1Q9H400 295 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 NEUROD4Q9HD90 331 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 SDHAF3Q9NRP4 125 aa9.58□□□□□ -0.88
CD44-227ENST00000528086 MRTO4Q9UKD2 239 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 PRRC2AP48634 2157 aaKnown RBP9.58□□□□□ -0.88
CD44-227ENST00000528086 VPS13CQ709C8 3753 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 CLDN24A6NM45 220 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 A8MXE2 369 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 ETV2O00321 342 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 HMGN4O00479 90 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SIAH2O43255 324 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SEC14L5O43304 696 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 CTAG2O75638 210 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 UGT2B17O75795 530 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 OR12D1P0DN82 309 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 KLK2P20151 261 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 POU3F2P20265 443 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 CCKARP32238 428 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SOAT1P35610 550 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 ATP12AP54707 1039 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 FOXF1Q12946 379 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 RCAN2Q14206 197 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 ZNF141Q15928 474 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 ARHGAP11BQ3KRB8 267 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SPDYE7PQ495Y7 208 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 GTDC1Q4AE62 458 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 COX20Q5RI15 118 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 PDZK1Q5T2W1 519 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 TYW3Q6IPR3 259 aaKnown RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 TNFAIP8L2Q6P589 184 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 ZNF474Q6S9Z5 364 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 FRRS1Q6ZNA5 592 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 FAM71CQ8NEG0 241 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 LINC01560Q8TB33 94 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 RAB3IL1Q8TBN0 382 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 ADAMTS15Q8TE58 950 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 NEURL3Q96EH8 262 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 RNF145Q96MT1 663 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 PRPF18Q99633 342 aaKnown RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 PINK1Q9BXM7 581 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SAP130Q9H0E3 1048 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 RNF122Q9H9V4 155 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 SLC52A3Q9NQ40 469 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 KCNN3Q9UGI6 736 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 MKLN1Q9UL63 735 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 FAF1Q9UNN5 650 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 CARD8Q9Y2G2 431 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 AP4B1Q9Y6B7 739 aa9.57□□□□□ -0.88
CD44-227ENST00000528086 MAP1AP78559 2803 aaPredicted RBP9.57□□□□□ -0.88
CD44-227ENST00000528086 MED13LQ71F56 2210 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 FAM47E-STBD1D6RA91 191 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 DVL2O14641 736 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ADAMDEC1O15204 470 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 KIAA0513O60268 411 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ERLIN1O75477 346 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 GSNP06396 782 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PGRP06401 933 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ZNF17P17021 662 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 UQCRC2P22695 453 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 UQCRC1P31930 480 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SKP2Q13309 424 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PON3Q15166 354 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 FLYWCH1Q4VC44 716 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PDCD4Q53EL6 469 aaKnown RBP9.56□□□□□ -0.88
CD44-227ENST00000528086 EPGNQ6UW88 154 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SPATA19Q7Z5L4 167 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 GRAMD2AQ8IUY3 354 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 FUNDC1Q8IVP5 155 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ZZZ3Q8IYH5 903 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ANKFN1Q8N957 763 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 B4GALNT2Q8NHY0 566 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PHOSPHO1Q8TCT1 267 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SMPDL3BQ92485 455 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 MOAP1Q96BY2 351 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SLC35G5Q96KT7 338 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ATP6V1G3Q96LB4 118 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 TM9SF2Q99805 663 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 EBF4Q9BQW3 602 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PIGQQ9BRB3 760 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SFXN3Q9BWM7 321 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SRXN1Q9BYN0 137 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 NMUR2Q9GZQ4 415 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 QRSL1Q9H0R6 528 aaKnown RBP9.56□□□□□ -0.88
CD44-227ENST00000528086 TMEM185BQ9H7F4 350 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 PTGES2Q9H7Z7 377 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 COQ10BQ9H8M1 238 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 SDR39U1Q9NRG7 319 aaPredicted RBP9.56□□□□□ -0.88
CD44-227ENST00000528086 GALNT8Q9NY28 637 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 BTNL2Q9UIR0 455 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 DTNAQ9Y4J8 743 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 USH1CQ9Y6N9 552 aa9.56□□□□□ -0.88
CD44-227ENST00000528086 ROS1P08922 2347 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 A0A087WZY1 265 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 SERINC4A6NH21 518 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 CCDC154A6NI56 674 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 SLC22A20A6NK97 555 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 EEF1E1-BLOC1S5C9J1V9 151 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 SCDO00767 359 aa9.55□□□□□ -0.88
CD44-227ENST00000528086 EEF1E1O43324 174 aaKnown RBP9.55□□□□□ -0.88
CD44-227ENST00000528086 CHRM4P08173 479 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms