RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 GEMIN6Q8WXD5 167 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RBM18Q96H35 190 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 TBX5Q99593 518 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CDCA7Q9BWT1 371 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 LMAN2LQ9H0V9 348 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 BPIFA1Q9NP55 256 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 FGF19O95750 216 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CH25HO95992 272 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 HEXAP06865 529 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ADH1AP07327 375 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CPN1P15169 458 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 AHRP35869 848 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF626Q68DY1 528 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 UNQ6126/PRO20091Q6UXV3 157 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 SLC44A3Q8N4M1 653 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 UBAC2Q8NBM4 344 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 DNAAF1Q8NEP3 725 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RGMAQ96B86 450 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 MRPL37Q9BZE1 423 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM117AQ9C073 453 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 OPN3Q9H1Y3 402 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 PRDM13Q9H4Q3 707 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 MRPS30Q9NP92 439 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 LHX9Q9NQ69 397 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 UQCC1Q9NVA1 299 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 TAS2R5Q9NYW4 299 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 MAP4K5Q9Y4K4 846 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 TNFRSF10BO14763 440 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ADAP00813 363 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 INHAP05111 366 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ACP2P11117 423 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 FOLR2P14207 255 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 EPB42P16452 691 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 MTNR1BP49286 362 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RAB5CP51148 216 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CDH4P55283 916 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 WNT3P56703 355 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RAB4BP61018 213 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 GAB1Q13480 694 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 RSU1Q15404 277 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 AFMIDQ63HM1 303 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 PSAPL1Q6NUJ1 521 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ARL9Q6T311 187 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CPXM2Q8N436 756 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 OR10R2Q8NGX6 335 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 STOML3Q8TAV4 291 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 ZNF671Q8TAW3 534 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 TMEM121BQ9BXQ6 578 aaPredicted RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 SPG21Q9NZD8 308 aa11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 CARHSP1Q9Y2V2 147 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM221BA6H8Z2 402 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 PPIHO43447 177 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 PRICKLE3O43900 615 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 IGHV2-5P01817 119 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 SNRPCP09234 159 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 PCGF2P35227 344 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RENBPP51606 427 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 CDK6Q00534 326 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 DYRK1AQ13627 763 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 PDZD11Q5EBL8 140 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 NOXRED1Q6NXP6 359 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 PLBD1Q6P4A8 553 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 BAIAP2L2Q6UXY1 529 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 GPRIN1Q7Z2K8 1008 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 AMIGO3Q86WK7 504 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 GTPBP8Q8N3Z3 284 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 FAM26EQ8N5C1 309 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 OR10D4PQ8NGN7 298 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 IL20RAQ9UHF4 553 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 EXOSC1Q9Y3B2 195 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 F5H0A9 414 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 TSTD3H0UI37 97 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 TGM5O43548 720 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 SC5DO75845 299 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RGS9O75916 674 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 DAOP14920 347 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 AGAP20933 346 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 VAMP1P23763 118 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RAB40BQ12829 278 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 SERPINA13PQ6UXR4 307 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 OR52I2Q8NH67 350 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 F2RL3Q96RI0 385 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 SEMA3CQ99985 751 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 MGME1Q9BQP7 344 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RDH14Q9HBH5 336 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 MOKQ9UQ07 419 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 NOD1Q9Y239 953 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 A8MVJ9 347 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 FFAR1O14842 300 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 RBBP9O75884 186 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 GKN3PP0CG01 181 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ARF4P18085 180 aaPredicted RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 CERS1P27544 350 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ACVRL1P37023 503 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ADH7P40394 386 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 MAPK9P45984 424 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 GIPRP48546 466 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 ELAVL1Q15717 326 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 EOGTQ5NDL2 527 aa11.25□□□□□ -0.61
LIMCH1-213ENST00000511496 CLEC12AQ5QGZ9 265 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms