RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DNAJB6O75190 326 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 EML2O95834 649 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ADH1BP00325 375 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SEC13P55735 322 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 Q5BKY6 102 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NOXA1Q86UR1 476 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ENKURQ8TC29 256 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GAL3ST3Q96A11 431 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MS4A4EQ96PG1 132 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BEX2Q9BXY8 128 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OBP2AQ9NY56 170 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NLGN3Q9NZ94 848 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KCMF1Q9P0J7 381 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TNFRSF10DQ9UBN6 386 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SPEF1Q9Y4P9 236 aa14.96□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SCN2AQ99250 2005 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQU0 124 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TSPAN9O75954 239 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HMGN1P05114 100 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CPN2P22792 545 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RPS21P63220 83 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 EEF1A1P68104 462 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SGCGQ13326 291 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DUSP5Q16690 384 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ARHGAP11BQ3KRB8 267 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MTSS1LQ765P7 747 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TRILQ7L0X0 811 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CXXC5Q7LFL8 322 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NR2C2APQ86WQ0 139 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LRRC25Q8N386 305 aaPredicted RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DUSP18Q8NEJ0 188 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR4E2Q8NGC2 313 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TMEM246Q9BRR3 403 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TMEM43Q9BTV4 400 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 APOOQ9BUR5 198 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TEX12Q9BXU0 123 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ENKD1Q9H0I2 346 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TRIM45Q9H8W5 580 aaPredicted RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RBFOX1Q9NWB1 397 aaKnown RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PAQR5Q9NXK6 330 aaPredicted RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 STMN3Q9NZ72 180 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KLF15Q9UIH9 416 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF223Q9UK11 482 aaPredicted RBP14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 WDR45Q9Y484 360 aa14.95□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D3KA0A087X1G2 549 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D3FA6NER0 549 aaPredicted RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BTN3A3O00478 584 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PRG2P13727 222 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FUT1P19526 365 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PTBP1P26599 531 aaKnown RBP eCLIP14.94□□□□□ -0.021e-7■□□□□ 10.1
MSH5-SAPCD1-208ENST00000498473 GCGRP47871 477 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TNFRSF17Q02223 184 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TBC1D3GQ6DHY5 549 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 WDR88Q6ZMY6 472 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 IDO2Q6ZQW0 420 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR4N5Q8IXE1 308 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ELMOD2Q8IZ81 293 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR2L13Q8N349 312 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 OR51G2Q8NGK0 314 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 UBASH3BQ8TF42 649 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 COL26A1Q96A83 441 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 KCNJ15Q99712 375 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SLC17A9Q9BYT1 436 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FGF22Q9HCT0 170 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TMEM74BQ9NUR3 256 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZC3H12DA2A288 527 aaKnown RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GTPBP1O00178 669 aaKnown RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 LYPD3O95274 346 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ALAS2P22557 587 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 HTR2AP28223 471 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CD83Q01151 205 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 IL18Q14116 193 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MAPK14Q16539 360 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CCNJQ5T5M9 372 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TRIQKQ629K1 86 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 FBXO42Q6P3S6 717 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PLBD1Q6P4A8 553 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 PAMR1Q6UXH9 720 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ZNF438Q7Z4V0 828 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 AMIGO1Q86WK6 493 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 C19orf18Q8NEA5 215 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NT5CQ8TCD5 201 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 BRIX1Q8TDN6 353 aaKnown RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SCARF2Q96GP6 870 aaPredicted RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SDF2Q99470 211 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MED20Q9H944 212 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 H2AFY2Q9P0M6 372 aaPredicted RBP14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CA14Q9ULX7 337 aa14.94□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RNF13O43567 381 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 SMIM10L1P0DMW3 83 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 MAKP20794 623 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 GALP22466 123 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 ATP6V1E1P36543 226 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 NUDT1P36639 197 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RNF144AP50876 292 aaPredicted RBP14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 CTBP2P56545 445 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DBPQ10586 325 aaPredicted RBP14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 DUSP8Q13202 625 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 RUNX2Q13950 521 aa14.93□□□□□ -0.02
MSH5-SAPCD1-208ENST00000498473 TATDN3Q17R31 274 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms