RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 SMYD3Q9H7B4 428 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 C10orf88Q9H8K7 445 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TRIM45Q9H8W5 580 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MTHFD2LQ9H903 347 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RNPEPL1Q9HAU8 725 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SYTL2Q9HCH5 934 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 TIGARQ9NQ88 270 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 ZC4H2Q9NQZ6 224 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 AGPAT3Q9NRZ7 376 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PARVAQ9NVD7 372 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 PKD2L2Q9NZM6 624 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 IFNKQ9P0W0 207 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 HMG20BQ9P0W2 317 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 DCDC2Q9UHG0 476 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 SLC12A6Q9UHW9 1150 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CAB39Q9Y376 341 aaPredicted RBP1.82□□□□□ -2.12
HMGB1-208ENST00000490788 MAD1L1Q9Y6D9 718 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 AP1M2Q9Y6Q5 423 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 CELSR3Q9NYQ7 3312 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NID2Q14112 1375 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 NUP98P52948 1817 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 WDFY3Q8IZQ1 3526 aa1.82□□□□□ -2.12
HMGB1-208ENST00000490788 RALGAPA1Q6GYQ0 2036 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TRBV4-1A0A0J9YWV2 114 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PVALEFA0A1B0GWK0 134 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TMEM120BA0PK00 339 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ILVBLA1L0T0 632 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RGSL1A5PLK6 1076 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ARHGEF35A5YM69 484 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TRABD2BA6NFA1 517 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ARGFXA6NJG6 315 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ZNF233A6NK53 670 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 C12orf71A8MTZ7 269 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 A8MUA0 341 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 A8MXK9 166 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 C5orf67F2Z3F1 127 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PGRMC1O00264 195 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LAD1O00515 517 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SOCS3O14543 225 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TOR1AO14656 332 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IFIT3O14879 490 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SURF4O15260 269 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CCDC22O60826 627 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DUSP11O75319 330 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PSIP1O75475 530 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SCO1O75880 301 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RBBP9O75884 186 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CCNKO75909 580 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CIAO1O76071 339 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SLITRK3O94933 977 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GOSR1O95249 250 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SIX3O95343 332 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GSRP00390 522 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IFNB1P01574 187 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IL6P05231 212 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 KRT8P05787 483 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CSN3P07498 182 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 STAG3L1P0CL83 205 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 COX5BP10606 129 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 PRG2P13727 222 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ANPEPP15144 967 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GATA1P15976 413 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 STMN1P16949 149 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 HOXB8P17481 243 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 EPORP19235 508 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 NCF2P19878 526 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TCN1P20061 433 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IL11P20809 199 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ACHEP22303 614 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CPT2P23786 658 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CMA1P23946 247 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SERPINB5P36952 375 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TAGLN2P37802 199 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ETV5P41161 510 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 OR3A3P47888 321 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 IFNAR2P48551 515 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 STARP49675 285 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 HNMTP50135 292 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SLC26A2P50443 739 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 TKTL1P51854 596 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 RAP1GDS1P52306 607 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 AP2S1P53680 142 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DSCR10P59022 87 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 DCDC1P59894 354 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SRP54P61011 504 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LMO4P61968 165 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 POLR2LP62875 67 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 FKBP1AP62942 108 aaKnown RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GALK2Q01415 458 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 FOLH1Q04609 750 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 GFPT1Q06210 699 aaPredicted RBP1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CACNG1Q06432 222 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 ACSM1Q08AH1 577 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 CALCOCO2Q13137 446 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 SELENBP1Q13228 472 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 STX3Q13277 289 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 NFATC2Q13469 925 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 POU6F1Q14863 301 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 LTB4RQ15722 352 aa1.81□□□□□ -2.12
HMGB1-208ENST00000490788 STX1AQ16623 288 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms