RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 DNAJC14Q6Y2X3 702 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 RNF130Q86XS8 419 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF614Q8N883 585 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 VPS37AQ8NEZ2 397 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 PNPT1Q8TCS8 783 aaKnown RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 XAGE5Q8WWM1 108 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 WNT2BQ93097 391 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ZG16BQ96DA0 208 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 RNF145Q96MT1 663 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 PANX1Q96RD7 426 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 PIGQQ9BRB3 760 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF350Q9GZX5 532 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 TMEM185BQ9H7F4 350 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF446Q9NWS9 450 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF629Q9UEG4 869 aaPredicted RBP16.33■□□□□ 0.2
COL9A3-214ENST00000490398 ICAM5Q9UMF0 924 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 DTNAQ9Y4J8 743 aa16.33■□□□□ 0.2
COL9A3-214ENST00000490398 DVL2O14641 736 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 UGT2B17O75795 530 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 SHC1P29353 583 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 CHI3L1P36222 383 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-214ENST00000490398 SF3B4Q15427 424 aaKnown RBP eCLIP16.32■□□□□ 0.21e-7■■■■□ 20.7
COL9A3-214ENST00000490398 TYW3Q6IPR3 259 aaKnown RBP16.32■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF621Q6ZSS3 439 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 GDF7Q7Z4P5 450 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 GTPBP8Q8N3Z3 284 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-214ENST00000490398 MEIOBQ8N635 442 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 CKAP2Q8WWK9 683 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 VPS33AQ96AX1 596 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 DTNBP1Q96EV8 351 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 THOC1Q96FV9 657 aaKnown RBP16.32■□□□□ 0.2
COL9A3-214ENST00000490398 ZBTB18Q99592 522 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 HOXD1Q9GZZ0 328 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 INTS9Q9NV88 658 aaKnown RBP16.32■□□□□ 0.2
COL9A3-214ENST00000490398 ZIM2Q9NZV7 527 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 L3MBTL1Q9Y468 752 aa16.32■□□□□ 0.2
COL9A3-214ENST00000490398 INTS1Q8N201 2190 aaKnown RBP16.31■□□□□ 0.2
COL9A3-214ENST00000490398 A0A087WZY1 265 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 DUXAA6NLW8 204 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 SYT5O00445 386 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 HMGN4O00479 90 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 UQCRC1P31930 480 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 PLAURQ03405 335 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 FOXF1Q12946 379 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF141Q15928 474 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 GSTA3Q16772 222 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 CTU2Q2VPK5 515 aaKnown RBP16.31■□□□□ 0.2
COL9A3-214ENST00000490398 TIGD2Q4W5G0 525 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 FRRS1Q6ZNA5 592 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 C16orf62Q7Z3J2 963 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 GRAMD2AQ8IUY3 354 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 MISPQ8IVT2 679 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 GOLGA6L1Q8N7Z2 621 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 ANKFN1Q8N957 763 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 GLB1L3Q8NCI6 653 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-214ENST00000490398 RFWD2Q8NHY2 731 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 FNDC9Q8TBE3 224 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 DYDC1Q8WWB3 177 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 ROPN1LQ96C74 230 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 ADGRG7Q96K78 797 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 PINK1Q9BXM7 581 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 QRSL1Q9H0R6 528 aaKnown RBP16.31■□□□□ 0.2
COL9A3-214ENST00000490398 TCF7L2Q9NQB0 619 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 JKAMPQ9P055 326 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 AP4B1Q9Y6B7 739 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 DOCK7Q96N67 2140 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 OTOGQ6ZRI0 2925 aa16.31■□□□□ 0.2
COL9A3-214ENST00000490398 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 C7orf72A4D263 438 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 SERINC4A6NH21 518 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 SLC22A20A6NK97 555 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 CLDN24A6NM45 220 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 KIAA0513O60268 411 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 STX11O75558 287 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 TNFSF13O75888 250 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF17P17021 662 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 SLC6A8P48029 635 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 KHKP50053 298 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 ASCL1P50553 236 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 MVDP53602 400 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 AQP5P55064 265 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 TLE4Q04727 773 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 CHRNEQ04844 493 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 MAPK11Q15759 364 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 SYPL1Q16563 259 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 MTERF4Q7Z6M4 381 aaKnown RBP16.3■□□□□ 0.2
COL9A3-214ENST00000490398 FUNDC1Q8IVP5 155 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 MIER2Q8N344 545 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 METTL25Q8N6Q8 603 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 ZNF527Q8NB42 609 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 GPR119Q8TDV5 335 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 ZFP90Q8TF47 636 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 ZBTB8AQ96BR9 441 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 AURKBQ96GD4 344 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-214ENST00000490398 TM9SF2Q99805 663 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 NMUR2Q9GZQ4 415 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 RUBCNLQ9H714 662 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 EXD2Q9NVH0 621 aa16.3■□□□□ 0.2
COL9A3-214ENST00000490398 A0A0J9YW62 118 aa16.29■□□□□ 0.2
COL9A3-214ENST00000490398 A0A1W2PNV4 684 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms