RNA–Protein interactions for RNA: ENST00000485102.1

HDAC6-227, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-227ENST00000485102 TNFAIP8L3Q5GJ75 292 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 SPDYAQ5MJ70 313 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 SFRP5Q5T4F7 317 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 BANPQ8N9N5 519 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 CDRT4Q8N9R6 151 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 OR6Y1Q8NGX8 325 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 RAB3IL1Q8TBN0 382 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 RNF128Q8TEB7 428 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 HSD17B8Q92506 261 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 OSTF1Q92882 214 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 FBXW5Q969U6 566 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 S100PBPQ96BU1 408 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 TACO1Q9BSH4 297 aaKnown RBP11.6□□□□□ -0.55
HDAC6-227ENST00000485102 TRMOQ9BU70 441 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 GSTO2Q9H4Y5 243 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 ESRP2Q9H6T0 727 aaKnown RBP11.6□□□□□ -0.55
HDAC6-227ENST00000485102 TMBIM4Q9HC24 238 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 MED17Q9NVC6 651 aa11.6□□□□□ -0.55
HDAC6-227ENST00000485102 A0A1W2PPM1 405 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 GOLGA8RI6L899 631 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 CD5LO43866 347 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 TBX19O60806 448 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 RSL1D1O76021 490 aaKnown RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 HSPA4LO95757 839 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 LINGO3P0C6S8 592 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 ME2P23368 584 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 PRPH2P23942 346 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 FRKP42685 505 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 CARD18P57730 90 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 DNAJB13P59910 316 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 VEZF1Q14119 521 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 KIAA0040Q15053 153 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 P2RY6Q15077 328 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 CFAP157Q5JU67 520 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 EXOSC6Q5RKV6 272 aaKnown RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 HBMQ6B0K9 141 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 NOXRED1Q6NXP6 359 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 ZCCHC12Q6PEW1 402 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 FIGNL1Q6PIW4 674 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 TFAP2EQ6VUC0 442 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 SSX8Q7RTT4 187 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 ARFGAP2Q8N6H7 521 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 POC1BQ8TC44 478 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 PIWIL2Q8TC59 973 aaKnown RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 GPR151Q8TDV0 419 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 SMAP2Q8WU79 429 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 PIK3R3Q92569 461 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 GTPBP3Q969Y2 492 aaKnown RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 CPNE4Q96A23 557 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-227ENST00000485102 KLHL15Q96M94 604 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 RNF145Q96MT1 663 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 KCNA7Q96RP8 456 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 NPAS1Q99742 590 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 SLCO5A1Q9H2Y9 848 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 TIGARQ9NQ88 270 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 UBQLN4Q9NRR5 601 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 FBXO34Q9NWN3 711 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 CCL27Q9Y4X3 112 aa11.59□□□□□ -0.55
HDAC6-227ENST00000485102 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.59□□□□□ -0.551e-12■■■□□ 17.8
HDAC6-227ENST00000485102 NUP214P35658 2090 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 UBFD1O14562 309 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 TNFSF11O14788 317 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 BIRC5O15392 142 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 PLIN3O60664 434 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 KCNK2O95069 426 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 TP53P04637 393 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 FESP07332 822 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 CD3EP07766 207 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 CPA3P15088 417 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ELK4P28324 431 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 RFX3P48380 749 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ZNF41P51814 821 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 MANFP55145 182 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 FOXA1P55317 472 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 TAB1Q15750 504 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ZNF239Q16600 458 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 PGGHGQ32M88 737 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ZNF672Q499Z4 452 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 TMEM201Q5SNT2 666 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 LIPMQ5VYY2 423 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 HMBOX1Q6NT76 420 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 PPP4R4Q6NUP7 873 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 SEZ6L2Q6UXD5 910 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ZYG11AQ6WRX3 759 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ZNF551Q7Z340 670 aaPredicted RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 DTX2Q86UW9 622 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 LILRA2Q8N149 483 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 C4orf33Q8N1A6 199 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 NANOS1Q8WY41 292 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ROBO4Q8WZ75 1007 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 SLC9A6Q92581 669 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 GIMAP5Q96F15 307 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 ATP6V1G3Q96LB4 118 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 EML4Q9HC35 981 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 MID1IP1Q9NPA3 183 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 KCNK9Q9NPC2 374 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 KLHL13Q9P2N7 655 aa11.58□□□□□ -0.56
HDAC6-227ENST00000485102 YLPM1P49750 1951 aaKnown RBP11.58□□□□□ -0.56
HDAC6-227ENST00000485102 TRIM13O60858 407 aa11.57□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms