RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CDC73Q6P1J9 531 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 MISPQ8IVT2 679 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 OR6K3Q8NGY3 331 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 OR5AK3PQ8NH89 298 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 ACTRT2Q8TDY3 377 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 OR5P2Q8WZ92 322 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 GMPPAQ96IJ6 420 aaPredicted RBP19.3■□□□□ 0.68
USP40-215ENST00000484528 STACQ99469 402 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 DUSP22Q9NRW4 184 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 KCNE3Q9Y6H6 103 aa19.3■□□□□ 0.68
USP40-215ENST00000484528 A0A1W2PQD3 144 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 SS18L1O75177 396 aaPredicted RBP19.29■□□□□ 0.68
USP40-215ENST00000484528 NUDT14O95848 222 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 FOSL1P15407 271 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 HOXB4P17483 251 aaPredicted RBP19.29■□□□□ 0.68
USP40-215ENST00000484528 ATP6V1C1P21283 382 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 LCN1P31025 176 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 NDUFAF6Q330K2 333 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 DCST2Q5T1A1 773 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 CBLN3Q6UW01 205 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 ESPNLQ6ZVH7 1005 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 Q71RC1 249 aaPredicted RBP19.29■□□□□ 0.68
USP40-215ENST00000484528 ZNF614Q8N883 585 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 OR56A1Q8NGH5 318 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 ADAMTS15Q8TE58 950 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 TUBGCP3Q96CW5 907 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 MARK4Q96L34 752 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 KLHL15Q96M94 604 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 ACTRT3Q9BYD9 372 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 C12orf49Q9H741 205 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 HHATLQ9HCP6 504 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 GPATCH2Q9NW75 528 aa19.29■□□□□ 0.68
USP40-215ENST00000484528 FAF1Q9UNN5 650 aaPredicted RBP19.29■□□□□ 0.68
USP40-215ENST00000484528 ADAMDEC1O15204 470 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 CFLARO15519 480 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 LYPLA1O75608 230 aaPredicted RBP19.28■□□□□ 0.68
USP40-215ENST00000484528 THBDP07204 575 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 BPGMP07738 259 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 LINGO3P0C6S8 592 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 SOAT1P35610 550 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 LILRA2Q8N149 483 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 ROBO4Q8WZ75 1007 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 OSTF1Q92882 214 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 PKNOX2Q96KN3 472 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 PLSCR4Q9NRQ2 329 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 ATAD3AQ9NVI7 634 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 PAQR5Q9NXK6 330 aaPredicted RBP19.28■□□□□ 0.68
USP40-215ENST00000484528 CARD8Q9Y2G2 431 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 USF3Q68DE3 2245 aa19.28■□□□□ 0.68
USP40-215ENST00000484528 SMPD2O60906 423 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 HSPA4LO95757 839 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 LOXP28300 417 aaPredicted RBP19.27■□□□□ 0.68
USP40-215ENST00000484528 RPS26P62854 115 aaKnown RBP19.27■□□□□ 0.68
USP40-215ENST00000484528 Q5PR19 223 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP40-215ENST00000484528 STAC2Q6ZMT1 411 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 HOMEZQ8IX15 550 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 OR5D16Q8NGK9 328 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 PSMA8Q8TAA3 256 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 AENQ8WTP8 325 aaKnown RBP19.27■□□□□ 0.68
USP40-215ENST00000484528 C18orf12Q96KH6 178 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 PPP1R36Q96LQ0 422 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 CCL19Q99731 98 aa19.27■□□□□ 0.68
USP40-215ENST00000484528 G6PDP11413 515 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 AGTR1P30556 359 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 SERPINB5P36952 375 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 TOMM34Q15785 309 aaPredicted RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 ACKR1Q16570 336 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 LSM12Q3MHD2 195 aaKnown RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 PDSS1Q5T2R2 415 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 P3H2Q8IVL5 708 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 RIMKLAQ8IXN7 391 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 CLEC4FQ8N1N0 589 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 ZNF527Q8NB42 609 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 ATP6V1C2Q8NEY4 427 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 RFWD2Q8NHY2 731 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 FBXO27Q8NI29 283 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 SFXN5Q8TD22 340 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 COQ8BQ96D53 544 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 OR7D2Q96RA2 312 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 PRPF18Q99633 342 aaKnown RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 DUSP26Q9BV47 211 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 SRXN1Q9BYN0 137 aa19.26■□□□□ 0.67
USP40-215ENST00000484528 ROPN1BQ9BZX4 212 aaPredicted RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 ZNF395Q9H8N7 513 aaPredicted RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 ROPN1Q9HAT0 212 aaPredicted RBP19.26■□□□□ 0.67
USP40-215ENST00000484528 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 WDR91A4D1P6 747 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 TYROBPO43914 113 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 EFNA2O43921 213 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 KRT16P08779 473 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 PRPS1L1P21108 318 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 ADSLP30566 484 aaPredicted RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 CARD18P57730 90 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 HBA1P69905 142 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 PDCD2Q16342 344 aaPredicted RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 ZNF239Q16600 458 aaKnown RBP19.25■□□□□ 0.67
USP40-215ENST00000484528 PGS1Q32NB8 556 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 KRTAP21-3Q3LHN1 58 aa19.25■□□□□ 0.67
USP40-215ENST00000484528 KLHL26Q53HC5 615 aa19.25■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms