RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 TMED10P49755 219 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 ST13P50502 369 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 RGS8P57771 180 aaPredicted RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 ZNF117Q03924 483 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 EPS8Q12929 822 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 PPP1R8Q12972 351 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 PIN1Q13526 163 aaPredicted RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 MEP1AQ16819 746 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 ENTPD8Q5MY95 495 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 SHQ1Q6PI26 577 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 TBPL2Q6SJ96 375 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 CBLN3Q6UW01 205 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 DEF8Q6ZN54 512 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 DND1Q8IYX4 353 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 OFCC1Q8IZS5 231 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 HS3ST5Q8IZT8 346 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 BEST3Q8N1M1 668 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 ZNF614Q8N883 585 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 LSMEM1Q8N8F7 131 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 GATSQ8NAP1 163 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 ZNF527Q8NB42 609 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 PAQR8Q8TEZ7 354 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 TMCO6Q96DC7 493 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 FRMD6Q96NE9 622 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 SECISBP2Q96T21 854 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 EPYCQ99645 322 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 MCHR1Q99705 422 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 SLC29A1Q99808 456 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 CIB1Q99828 191 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 BDH2Q9BUT1 245 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 DPH1Q9BZG8 443 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 LAT2Q9GZY6 243 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 GABARAPL1Q9H0R8 117 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 CACYBPQ9HB71 228 aaKnown RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 PROK2Q9HC23 129 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 RHCGQ9UBD6 479 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 ICAM5Q9UMF0 924 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 OAZ3Q9UMX2 235 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 TESMINQ9Y4I5 508 aa7.54□□□□□ -1.2
USP4-210ENST00000483212 MAGED1Q9Y5V3 778 aaPredicted RBP7.54□□□□□ -1.2
USP4-210ENST00000483212 IGLV3-32A0A0A0MS00 114 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 A0A1W2PRQ8 180 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 SAC3D1A6NKF1 404 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CPSF4LA6NMK7 179 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 PDLIM1O00151 329 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 FAAHO00519 579 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 DLGAP1O14490 977 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 SOCS2O14508 198 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ADAMDEC1O15204 470 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 KLK10O43240 276 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ZNF264O43296 627 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 NDUFB5O43674 189 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 SCO2O43819 266 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 EIF4E2O60573 245 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 CEACAM4O75871 244 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 OR5F1O95221 314 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 UBTFL6P0CB48 400 aaPredicted RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 CCL3P10147 92 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 FPR1P21462 350 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ITGA3P26006 1051 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 DNAJA1P31689 397 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 EIF2S3P41091 472 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 HLCSP50747 726 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 PPP2R2BQ00005 443 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 SPIBQ01892 262 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 DGCR6Q14129 220 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 GK3PQ14409 553 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 GANABQ14697 944 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 ANKRD34AQ69YU3 496 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 BICRALQ6AI39 1079 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ZNF770Q6IQ21 691 aaPredicted RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 IL20RBQ6UXL0 311 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ZNF550Q7Z398 422 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 GDF7Q7Z4P5 450 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 LSRQ86X29 649 aaPredicted RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 MISPQ8IVT2 679 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 GPALPP1Q8IXQ4 340 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ZNF440Q8IYI8 595 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 GALNT16Q8N428 558 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CLEC1AQ8NC01 280 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ICA1LQ8NDH6 482 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 OR5M3Q8NGP4 307 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 OR5K1Q8NHB7 308 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 PHOSPHO1Q8TCT1 267 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ASB15Q8WXK1 588 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 NR4A3Q92570 626 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 NRBF2Q96F24 287 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 CCNL2Q96S94 520 aaPredicted RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 PSD2Q9BQI7 771 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 PRSS27Q9BQR3 290 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 ANGPTL4Q9BY76 406 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 TBL1XR1Q9BZK7 514 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 POLR2J2Q9GZM3 115 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 ING2Q9H160 280 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 POLR2J3Q9H1A7 115 aaKnown RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 ARMC7Q9H6L4 198 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 COQ10BQ9H8M1 238 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 REEP1Q9H902 201 aa7.53□□□□□ -1.2
USP4-210ENST00000483212 NMNAT1Q9HAN9 279 aaPredicted RBP7.53□□□□□ -1.2
USP4-210ENST00000483212 CPNE5Q9HCH3 593 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms