RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 ENPP6Q6UWR7 440 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SLC35F3Q8IY50 421 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 C1orf87Q8N0U7 546 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 C12orf42Q96LP6 360 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF337Q9Y3M9 751 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 DOCK7Q96N67 2140 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 A0A1W2PPV4 95 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 HBQ1P09105 142 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 GIPRP48546 466 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 C22orf39Q6P5X5 142 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TIPARPQ7Z3E1 657 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 OR4K5Q8NGD3 323 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SLC25A44Q96H78 314 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SACM1LQ9NTJ5 587 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 POT1Q9NUX5 634 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 FOCADQ5VW36 1801 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SERPINA7P05543 415 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 PSMB1P20618 241 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 KDM8Q8N371 416 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 IL17RCQ8NAC3 791 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 NETO1Q8TDF5 533 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF75AQ96N20 296 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 KCNA7Q96RP8 456 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SEMA6CQ9H3T2 930 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 VAPAQ9P0L0 249 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 FANCMQ8IYD8 2048 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 FER1L5A0AVI2 2057 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TRAV18A0A075B6X5 111 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 A0A1W2PQ09 198 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 GABRB3P28472 473 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 DCTP40126 519 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 SP3Q02447 781 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 PRKCZQ05513 592 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 TRMT2BQ96GJ1 504 aaKnown RBP12.58□□□□□ -0.4
COL6A3-209ENST00000472056 THSD1Q9NS62 852 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 LAMB2P55268 1798 aa12.58□□□□□ -0.4
COL6A3-209ENST00000472056 MN1Q10571 1320 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 KIAA0355O15063 1070 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 MAS1P04201 325 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 BCKDHBP21953 392 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 GABRA3P34903 492 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 NKX2-5P52952 324 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF92Q03936 586 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 TMEM115Q12893 351 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 CEACAM7Q14002 265 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 PDLIM3Q53GG5 364 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ARSIQ5FYB1 569 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR51T1Q8NGJ9 327 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 C16orf78Q8WTQ4 265 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF681Q96N22 645 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR10A5Q9H207 317 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR10A2Q9H208 303 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 EXO1Q9UQ84 846 aaKnown RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF281Q9Y2X9 895 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 GALTP07902 379 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ADORA3P0DMS8 318 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 SSBP1Q04837 148 aaKnown RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 UNC50Q53HI1 259 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 CATSPEREQ5SY80 951 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 SDHAF4Q5VUM1 108 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 LARP4Q71RC2 724 aaKnown RBP eCLIP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 SLC35F2Q8IXU6 374 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR52E2Q8NGJ4 325 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 C11orf84Q9BUA3 381 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 C1QTNF2Q9BXJ5 285 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 NWD2Q9ULI1 1742 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 TOX4O94842 621 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 MAT2AP31153 395 aaKnown RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 C9orf131Q5VYM1 1079 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ZNF300Q96RE9 604 aaPredicted RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 PCDHB10Q9UN67 800 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 HLA-DMAP28067 261 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 RAB11AP62491 216 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 NOGQ13253 232 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 BRICD5Q6PL45 260 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 SLC2A12Q8TD20 617 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 PELI2Q9HAT8 420 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 RREB1Q92766 1687 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 STK17BO94768 372 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 TPPPO94811 219 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 DRD5P21918 477 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 CHRNA4P43681 627 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 INTS14Q96SY0 518 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 DHRS4Q9BTZ2 278 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 SLC25A32Q9H2D1 315 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 TAS2R16Q9NYV7 291 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 HHLA2Q9UM44 414 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 RIPK3Q9Y572 518 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 HMGCLP35914 325 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 PLK5Q496M5 336 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 OR6C4Q8NGE1 309 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 HUS1BQ8NHY5 278 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 RBPMSQ93062 196 aaKnown RBP12.57□□□□□ -0.4
COL6A3-209ENST00000472056 ISYNA1Q9NPH2 558 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 JTBO76095 146 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 CLDN7O95471 211 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 RAB5AP20339 215 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 KIAA0895LQ68EN5 471 aa12.57□□□□□ -0.4
COL6A3-209ENST00000472056 TTLL10Q6ZVT0 673 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms