RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 VEZF1Q14119 521 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 INAQ16352 499 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 HYAL4Q2M3T9 481 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 ZNF311Q5JNZ3 666 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 SAMD4BQ5PRF9 694 aaKnown RBP13.46□□□□□ -0.25
COL9A3-209ENST00000469852 MRPL2Q5T653 305 aaKnown RBP13.46□□□□□ -0.25
COL9A3-209ENST00000469852 CCDC80Q76M96 950 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 SIAH3Q8IW03 269 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 PEX5LQ8IYB4 626 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 SMYD1Q8NB12 490 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 FAM98AQ8NCA5 519 aaKnown RBP13.46□□□□□ -0.25
COL9A3-209ENST00000469852 FAM71CQ8NEG0 241 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 PMM1Q92871 262 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 WFDC6Q9BQY6 131 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 BTBD10Q9BSF8 475 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 PCDHAC1Q9H158 963 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 UBQLN3Q9H347 655 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 ASF1BQ9NVP2 202 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 DNAJB12Q9NXW2 375 aaKnown RBP13.46□□□□□ -0.25
COL9A3-209ENST00000469852 ANAPC2Q9UJX6 822 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 BOKQ9UMX3 212 aaPredicted RBP13.46□□□□□ -0.25
COL9A3-209ENST00000469852 LIPGQ9Y5X9 500 aa13.46□□□□□ -0.25
COL9A3-209ENST00000469852 B8ZZF3 427 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 GTPBP1O00178 669 aaKnown RBP13.45□□□□□ -0.26
COL9A3-209ENST00000469852 CXCR6O00574 342 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 GYG2O15488 501 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 FRS3O43559 492 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 HCRTR2O43614 444 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 DNAJA2O60884 412 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 WISP1O95388 367 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 THBS1P07996 1170 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF24P17028 368 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 GGT1P19440 569 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 CD247P20963 164 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 HTR1EP28566 365 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ADH7P40394 386 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 FOXK1P85037 733 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 C17orf67Q0P5P2 114 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 FXNQ16595 210 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 DUSP7Q16829 419 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 LIN52Q52LA3 116 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 CMPK2Q5EBM0 449 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF324BQ6AW86 544 aaPredicted RBP13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ARMC8Q8IUR7 673 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 SLC30A8Q8IWU4 369 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 GPR32P1Q8NGA4 272 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 FIG4Q92562 907 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF607Q96SK3 696 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 NPAS1Q99742 590 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 THTPAQ9BU02 230 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 CADM1Q9BY67 442 aaKnown RBP13.45□□□□□ -0.26
COL9A3-209ENST00000469852 SDHAF3Q9NRP4 125 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.45□□□□□ -0.26
COL9A3-209ENST00000469852 ICAM5Q9UMF0 924 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 SHANK1Q9Y566 2161 aa13.45□□□□□ -0.26
COL9A3-209ENST00000469852 MED12Q93074 2177 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 CDHR4A6H8M9 788 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 TTLL8A6PVC2 850 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 H3BNH8 94 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 EBAG9O00559 213 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 AP3D1O14617 1153 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ZNHIT1O43257 154 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF264O43296 627 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 CDC40O60508 579 aaKnown RBP eCLIP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 CYP7B1O75881 506 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 PRG2P13727 222 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 TCEA1P23193 301 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ELAVL4P26378 380 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 GDF1P27539 372 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 KDELR2P33947 212 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ALDH6A1Q02252 535 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 GABPB1Q06547 395 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 TOMM34Q15785 309 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 LRRC23Q53EV4 343 aaPredicted RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 INTS11Q5TA45 600 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 RNF220Q5VTB9 566 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 DHRS4L2Q6PKH6 230 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 FAM180AQ6UWF9 173 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ARSKQ6UWY0 536 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 CCDC121Q6ZUS5 278 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 EIF3MQ7L2H7 374 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 PATL1Q86TB9 770 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 KRT73Q86Y46 540 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 MISPQ8IVT2 679 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 TMCO5AQ8N6Q1 288 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 OR4K17Q8NGC6 315 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 OR10Q1Q8NGQ4 319 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 B4GALNT2Q8NHY0 566 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 OIT3Q8WWZ8 545 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 LAT2Q9GZY6 243 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 DEFB127Q9H1M4 99 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ZDHHC11Q9H8X9 412 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 SEC14L3Q9UDX4 400 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 PRPF19Q9UMS4 504 aaKnown RBP13.44□□□□□ -0.26
COL9A3-209ENST00000469852 SLC35A3Q9Y2D2 325 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 IFT52Q9Y366 437 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 ZNF407Q9C0G0 2248 aa13.44□□□□□ -0.26
COL9A3-209ENST00000469852 MYO18BQ8IUG5 2567 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 CYSRT1A8MQ03 144 aa13.43□□□□□ -0.26
COL9A3-209ENST00000469852 SHISA8B8ZZ34 492 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms