RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 CD180Q99467 661 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 RBCK1Q9BYM8 510 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 KRCC1Q9NPI7 259 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-217ENST00000466159 CLDND1Q9NY35 253 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 SPACA6W5XKT8 324 aa8.3□□□□□ -1.08
SYNE1-217ENST00000466159 MYO15AQ9UKN7 3530 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 A0A0J9YY10 115 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 C2orf92A0A1B0GVN3 265 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TRDV1A0A1B0GX56 115 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 BHLHE40O14503 412 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 DVL2O14641 736 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 RDH16O75452 317 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 SEMA4FO95754 770 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TBXA2RP21731 343 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 MAP3K8P41279 467 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 UBE2IP63279 158 aaKnown RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 DAB2P98082 770 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 DDI2Q5TDH0 399 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 FCRLBQ6BAA4 426 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 THSD4Q6ZMP0 1018 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF614Q8N883 585 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 NLGN4YQ8NFZ3 816 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 OR13C2Q8NGS9 318 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 BRIX1Q8TDN6 353 aaKnown RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 GRHL3Q8TE85 626 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 RSC1A1Q92681 617 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ART5Q96L15 291 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 HS6ST2Q96MM7 605 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 STACQ99469 402 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TBX5Q99593 518 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 PRDM9Q9NQV7 894 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 POT1Q9NUX5 634 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 COMMD3Q9UBI1 195 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CD207Q9UJ71 328 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 SATB2Q9UPW6 733 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ENTPD2Q9Y5L3 495 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CD8B2A6NJW9 211 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 C12orf71A8MTZ7 269 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 J3QRE1 110 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 GABRPO00591 440 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 DYRK3O43781 588 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 AKAP8O43823 692 aaKnown RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 BRINP1O60477 761 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TMCC2O75069 709 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ADAM11O75078 769 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 RFPL3O75679 317 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 IGHV4-34P06331 123 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CSF3P09919 207 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CD8BP10966 210 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 BMP7P18075 431 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 OR2B6P58173 313 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 COPZ1P61923 177 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 POU6F2P78424 691 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CSTF1Q05048 431 aaKnown RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TMEM44Q2T9K0 475 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 AGAP6Q5VW22 663 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF322Q6U7Q0 402 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TAF8Q7Z7C8 310 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 MARCH9Q86YJ5 346 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF655Q8N720 491 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 FAM181AQ8N9Y4 354 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 GALNT6Q8NCL4 622 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 OR52R1Q8NGF1 315 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 OR52L1Q8NGH7 329 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 OR9A4Q8NGU2 314 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 SETD6Q8TBK2 473 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CNOT9Q92600 299 aaKnown RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CTHRC1Q96CG8 243 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 BPIFA2Q96DR5 249 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 ABHD8Q96I13 439 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 AGAP4Q96P64 663 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 CCDC3Q9BQI4 270 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 YIPF2Q9BWQ6 316 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 MARCH7Q9H992 704 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 MEPEQ9NQ76 525 aaPredicted RBP8.29□□□□□ -1.08
SYNE1-217ENST00000466159 PCDHGB2Q9Y5G2 931 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 HS3ST3A1Q9Y663 406 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 SPEGQ15772 3267 aa8.29□□□□□ -1.08
SYNE1-217ENST00000466159 TRAV27A0A087WT01 109 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 REM1O75628 298 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 CBX7O95931 251 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 HLA-DPB1P04440 258 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 SAGP10523 405 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ST6GAL1P15907 406 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 LTBRP36941 435 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 EIF2B5Q13144 721 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 GPR50Q13585 617 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 KLHL12Q53G59 568 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 EOGTQ5NDL2 527 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 NIPAL3Q6P499 406 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 XKRXQ6PP77 449 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 UTS2BQ765I0 119 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 MEPCEQ7L2J0 689 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ABI3BPQ7Z7G0 1075 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 RNF113BQ8IZP6 322 aaKnown RBP8.28□□□□□ -1.08
SYNE1-217ENST00000466159 TMEM99Q8N816 258 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 ATP6V1C2Q8NEY4 427 aa8.28□□□□□ -1.08
SYNE1-217ENST00000466159 OR4N2Q8NGD1 307 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms