RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 OSTF1Q92882 214 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 SRXN1Q9BYN0 137 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ZCCHC3Q9NUD5 404 aaKnown RBP14.36□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF701Q9NV72 531 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-204ENST00000462475 GIN1Q9NXP7 522 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 GPR52Q9Y2T5 361 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 DNAJC15Q9Y5T4 150 aa14.36□□□□□ -0.11
COL7A1-204ENST00000462475 NPIPA5A0A0B4J1W7 369 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 NPIPA7E9PJI5 369 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 EFNA2O43921 213 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 NTN1O95631 604 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 HMGN2P05204 90 aaKnown RBP14.35□□□□□ -0.11
COL7A1-204ENST00000462475 NPIPA8P0DM63 369 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 BCKDHAP12694 445 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 KRT4P19013 534 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 SERPINB4P48594 390 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 POU6F2P78424 691 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-204ENST00000462475 LASP1Q14847 261 aaKnown RBP14.35□□□□□ -0.11
COL7A1-204ENST00000462475 TSC22D1Q15714 1073 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 PDSS1Q5T2R2 415 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 ZCCHC12Q6PEW1 402 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 TFAP2EQ6VUC0 442 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 TRABD2AQ86V40 505 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 TDRPQ86YL5 185 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 ZNF611Q8N823 705 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 LRRN4CLQ8ND94 238 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 RAB3IL1Q8TBN0 382 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 EPS8L3Q8TE67 593 aaKnown RBP14.35□□□□□ -0.11
COL7A1-204ENST00000462475 AKAP1Q92667 903 aaKnown RBP eCLIP14.35□□□□□ -0.11
COL7A1-204ENST00000462475 CDS1Q92903 461 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 S100PBPQ96BU1 408 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 CHMP6Q96FZ7 201 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 BTBD2Q9BX70 525 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 OR10A4Q9H209 315 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 CXorf56Q9H5V9 222 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 FANCFQ9NPI8 374 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 GIMAP2Q9UG22 337 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 TMED5Q9Y3A6 229 aa14.35□□□□□ -0.11
COL7A1-204ENST00000462475 PIP5K1BO14986 540 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 SCAMP2O15127 329 aaKnown RBP14.34□□□□□ -0.11
COL7A1-204ENST00000462475 GCM2O75603 506 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-204ENST00000462475 CHEK2O96017 543 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 CHRNGP07510 517 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 ELK4P28324 431 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 ASMTP46597 345 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 ATP5J2P56134 94 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 CARD18P57730 90 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 CAPRIN1Q14444 709 aaKnown RBP14.34□□□□□ -0.11
COL7A1-204ENST00000462475 CBLN3Q6UW01 205 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 NUFIP2Q7Z417 695 aaKnown RBP14.34□□□□□ -0.11
COL7A1-204ENST00000462475 DDIASQ8IXT1 998 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 GABRG1Q8N1C3 465 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 OR7A2PQ8NGA2 310 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 KIF18AQ8NI77 898 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 PHOSPHO1Q8TCT1 267 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 TWIST2Q8WVJ9 160 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 TRIM44Q96DX7 344 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-204ENST00000462475 MTERF3Q96E29 417 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 STACQ99469 402 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 MDFIQ99750 246 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 TRMOQ9BU70 441 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 DUSP22Q9NRW4 184 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 MID2Q9UJV3 735 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 SNX8Q9Y5X2 465 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 PRR14LQ5THK1 2151 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 HEATR5AQ86XA9 2040 aa14.34□□□□□ -0.11
COL7A1-204ENST00000462475 TRIM13O60858 407 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 HSPA4LO95757 839 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 HPCAL1P37235 193 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 EIF1P41567 113 aaKnown RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 PPP2R2BQ00005 443 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 MLC1Q15049 377 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 TOMM34Q15785 309 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 NDUFAF6Q330K2 333 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 UGT3A2Q3SY77 523 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 TMEM201Q5SNT2 666 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 GTF2IRD2BQ6EKJ0 949 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 LRIG3Q6UXM1 1119 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 R3HCC1LQ7Z5L2 792 aaKnown RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 GTF2IRD2Q86UP8 949 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 TUSC5Q8IXB3 177 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 ZNF619Q8N2I2 560 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 STEAP2Q8NFT2 490 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 LILRB1Q8NHL6 650 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 FBXO27Q8NI29 283 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 UBLCP1Q8WVY7 318 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 CPNE4Q96A23 557 aaPredicted RBP14.33□□□□□ -0.12
COL7A1-204ENST00000462475 ZNF524Q96C55 264 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 PIGUQ9H490 435 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 COQ10BQ9H8M1 238 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 KLHL13Q9P2N7 655 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 ATP6V1HQ9UI12 483 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 ICAM5Q9UMF0 924 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 LAMP3Q9UQV4 416 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 CARD8Q9Y2G2 431 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 KCNE3Q9Y6H6 103 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 FBN3Q75N90 2809 aa14.33□□□□□ -0.12
COL7A1-204ENST00000462475 KIF2AO00139 706 aaPredicted RBP14.32□□□□□ -0.12
COL7A1-204ENST00000462475 TMCC2O75069 709 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms