RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LACC1Q8IV20 430 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 MMGT1Q8N4V1 131 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 SELENOMQ8WWX9 145 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 NTNG2Q96CW9 530 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 HSPBAP1Q96EW2 488 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 LRRC46Q96FV0 321 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 TMEM41AQ96HV5 264 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 TIMP4Q99727 224 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 BRINP2Q9C0B6 783 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 NMRK1Q9NWW6 199 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 ZNF629Q9UEG4 869 aaPredicted RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 ZNF639Q9UID6 485 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 PSME2Q9UL46 239 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 SNX6Q9UNH7 406 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 SLC12A4Q9UP95 1085 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 L3MBTL1Q9Y468 752 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 HCFC1P51610 2035 aa6.6□□□□□ -1.35
USP54-208ENST00000461520 PHF3Q92576 2039 aaKnown RBP6.6□□□□□ -1.35
USP54-208ENST00000461520 INTS1Q8N201 2190 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 A0A087WUV0 522 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 A8MT66 165 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 TRIM49D1C9J1S8 452 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ACOX3O15254 700 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ERAL1O75616 437 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 TRAPPC6AO75865 159 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 BCAS2O75934 225 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 LRATO95237 230 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 PDYNP01213 254 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ABCB1P08183 1280 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 SNRPAP09012 282 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 RHOXF2BP0C7M4 288 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 HSD3B1P14060 373 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 CD1EP15812 388 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 CSNK2A2P19784 350 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 TAC1P20366 129 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 PTPN6P29350 595 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 HSD17B3P37058 310 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ASCL1P50553 236 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ART1P52961 327 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 CDH13P55290 713 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 DCAF7P61962 342 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 RPS7P62081 194 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 ZNF844Q08AG5 666 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 GALNT1Q10472 559 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 SNTA1Q13424 505 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 RAB39AQ14964 217 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 FBXL19-AS1Q494R0 122 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ACSF3Q4G176 576 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 SGO1Q5FBB7 561 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 NSUN5P2Q63ZY6 315 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 TIGD3Q6B0B8 471 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 SLC30A6Q6NXT4 461 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 TMEM64Q6YI46 380 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 RPS27LQ71UM5 84 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 NUP54Q7Z3B4 507 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 LCA5Q86VQ0 697 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 PRR22Q8IZ63 422 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 MNS1Q8NEH6 495 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 OR1J4Q8NGS1 313 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 DCAKDQ8WVC6 231 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 IFT81Q8WYA0 676 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 TM4SF18Q96CE8 201 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 CTHRC1Q96CG8 243 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 C16orf45Q96MC5 204 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 FAIM2Q9BWQ8 316 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 NXF5Q9H1B4 397 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 METTL7AQ9H8H3 244 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 FARSBQ9NSD9 589 aaKnown RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 MAT2BQ9NZL9 334 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 VPS29Q9UBQ0 182 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 PRODH2Q9UF12 536 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.59□□□□□ -1.35
USP54-208ENST00000461520 FETUBQ9UGM5 382 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 BCAP29Q9UHQ4 241 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ZNF225Q9UK10 706 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 DTX4Q9Y2E6 619 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 C15orf41Q9Y2V0 281 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 ZNF780BQ9Y6R6 833 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 NIPBLQ6KC79 2804 aaeCLIP6.59□□□□□ -1.35
USP54-208ENST00000461520 ACANP16112 2415 aa6.59□□□□□ -1.35
USP54-208ENST00000461520 EXOC1LA0A1B0GW35 172 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 MBD3L4A6NDZ8 208 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 MBD3L3A6NE82 208 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 FRG2CA6NGY1 282 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 MBD3L5A6NJ08 208 aaPredicted RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 CD8B2A6NJW9 211 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 PPP6CO00743 305 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TO15178 435 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ICOSLGO75144 302 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 CTAG2O75638 210 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 SUPT7LO94864 414 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 OR4F21O95013 312 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 ACTL6AO96019 429 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 KRT6AP02538 564 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 KRT6BP04259 564 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 TSPAN8P19075 237 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 DRD5P21918 477 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 UQCRC1P31930 480 aa6.58□□□□□ -1.36
USP54-208ENST00000461520 FEN1P39748 380 aaKnown RBP6.58□□□□□ -1.36
USP54-208ENST00000461520 PPICP45877 212 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms