RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TMEM191CA6NGB0 347 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CXorf49A8MYA2 514 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 M0QYT0 321 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ST8SIA3O43173 380 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 LIASO43766 372 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 SRPX2O60687 465 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 SIX3O95343 332 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 IFNA21P01568 189 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ENO1P06733 434 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 FAM58BPP0C7Q3 252 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 SNHG28P0DPA3 235 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CEACAM1P13688 526 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 GYPEP15421 78 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 PAICSP22234 425 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ACP1P24666 158 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 PRDX6P30041 224 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 MPLP40238 635 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 LHX1P48742 406 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 RPL14P50914 215 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ELLP55199 621 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 DHODHQ02127 395 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CHRNB3Q05901 458 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 FHL3Q13643 280 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TMED2Q15363 201 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 OR8G1Q15617 311 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 PCK2Q16822 640 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF528Q3MIS6 628 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 Q5BKY6 102 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 RNASE10Q5GAN6 216 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TSTD2Q5T7W7 516 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 REEP3Q6NUK4 255 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ZC3H14Q6PJT7 736 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 KYAT3Q6YP21 454 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 RBPMS2Q6ZRY4 209 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CREB3L2Q70SY1 520 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 PIWIL4Q7Z3Z4 852 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF546Q86UE3 836 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CD163Q86VB7 1156 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 XYLT1Q86Y38 959 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 KMT5CQ86Y97 462 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 UBQLNLQ8IYU4 475 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM199Q8N511 208 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 FBXL13Q8NEE6 735 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 OR8J3Q8NGG0 315 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 DYNC2LI1Q8TCX1 351 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 BLOC1S5Q8TDH9 187 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 PSMG2Q969U7 264 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF583Q96ND8 569 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 KLHL32Q96NJ5 620 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TSSK3Q96PN8 268 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC38A1Q9H2H9 487 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM38AQ9H6F2 299 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 KIR3DX1Q9H7L2 352 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 ZBTB26Q9HCK0 441 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 GPN1Q9HCN4 374 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 OSER1Q9NX31 292 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 BFARQ9NZS9 450 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 DHCR7Q9UBM7 475 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 CRLS1Q9UJA2 301 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 DKKL1Q9UK85 242 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 UBE2J1Q9Y385 318 aaPredicted RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 URGCP-MRPS24S4R325 110 aa4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 LAMA2P24043 3122 aaKnown RBP4.46□□□□□ -1.69
CCDC88A-209ENST00000456975 A0A1B0GV72 72 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 NEMP2A6NFY4 417 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PRR19A6NJB7 356 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 LIPT2A6NK58 231 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 H3BNX3 289 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 KPNA3O00505 521 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 DHHO43323 396 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PRSS23O95084 383 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CTDNEP1O95476 244 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ADAP00813 363 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 C9P02748 559 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CFIP05156 583 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CD5P06127 495 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CD48P09326 243 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 UQCRBP14927 111 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 SAT1P21673 171 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PCMT1P22061 227 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 FDXRP22570 491 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PBX3P40426 434 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNJ3P48549 501 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 XKP51811 444 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 PRKXP51817 358 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CRYBA4P53673 196 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 WNT3AP56704 352 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 LILRA4P59901 499 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 RAP1BP61224 184 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 NDUFA9Q16795 377 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF750Q32MQ0 723 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 C18orf21Q32NC0 220 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 AMZ1Q400G9 498 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 RAET1LQ5VY80 246 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF544Q6NX49 715 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 DCUN1D2Q6PH85 259 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 DPY19L3Q6ZPD9 716 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 SEM1Q6ZVN7 128 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 TMPRSS11FQ6ZWK6 438 aa4.46□□□□□ -1.7
CCDC88A-209ENST00000456975 CHST9Q7L1S5 443 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms