RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 THY1P04216 161 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 THBS1P07996 1170 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 CCL3P10147 92 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 NAGAP17050 411 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 KRT20P35900 424 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 CD96P40200 585 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 ACAA2P42765 397 aaKnown RBP10.05□□□□□ -0.8
SCN9A-205ENST00000454569 MEP1AQ16819 746 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 FAM98BQ52LJ0 330 aaKnown RBP10.05□□□□□ -0.8
SCN9A-205ENST00000454569 ANKRD34AQ69YU3 496 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 PQLC1Q8N2U9 271 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SLC5A8Q8N695 610 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SLC15A4Q8N697 577 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 GOLM1Q8NBJ4 401 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 CLEC1AQ8NC01 280 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 FDCSPQ8NFU4 85 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SLC22A8Q8TCC7 542 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 NRG4Q8WWG1 115 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SIGLEC12Q96PQ1 595 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 BARD1Q99728 777 aaKnown RBP10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SPATA5L1Q9BVQ7 753 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 MAGIXQ9H6Y5 334 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SH2D2AQ9NP31 389 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 RIMS3Q9UJD0 308 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 POLHQ9Y253 713 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 CARD8Q9Y2G2 431 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 IFT52Q9Y366 437 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 CSAG2Q9Y5P2 127 aa10.05□□□□□ -0.8
SCN9A-205ENST00000454569 MAGED1Q9Y5V3 778 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-205ENST00000454569 SPENQ96T58 3664 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 A0A0G2JMM0 328 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 A0A1W2PPB8 328 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 A0A1W2PRS3 328 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 KIR3DP1A8MWS1 328 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ALG1L2C9J202 215 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PRSS23O95084 383 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ANGPTL1O95841 491 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 WDPCPO95876 746 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 CSTAP01040 98 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 UBTFL6P0CB48 400 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 HTR2AP28223 471 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 EVI2BP34910 448 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 VHLP40337 213 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 CASP3P42574 277 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 SOX8P57073 446 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ZNF117Q03924 483 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 TLE3Q04726 772 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 KCNAB2Q13303 367 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PIN1Q13526 163 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 GANABQ14697 944 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 LARS2Q15031 903 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 LIN52Q52LA3 116 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PRAMEF20Q5VT98 475 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 RNF220Q5VTB9 566 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 SPINK14Q6IE38 97 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 JMJD6Q6NYC1 403 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 CCDC81Q6ZN84 652 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 NUP54Q7Z3B4 507 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PHOSPHO1Q8TCT1 267 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 DUSP19Q8WTR2 217 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PHF10Q8WUB8 498 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ASB15Q8WXK1 588 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PROX1Q92786 737 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PMM1Q92871 262 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 NTNG2Q96CW9 530 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 SH3YL1Q96HL8 342 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 VPS50Q96JG6 964 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 NPAS1Q99742 590 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 HES7Q9BYE0 225 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 GPR83Q9NYM4 423 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 C6orf203Q9P0P8 240 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 MRTO4Q9UKD2 239 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 CNOT11Q9UKZ1 510 aaKnown RBP10.04□□□□□ -0.8
SCN9A-205ENST00000454569 BAG5Q9UL15 447 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 A4GNTQ9UNA3 340 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 ZNF232Q9UNY5 417 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 BSNQ9UPA5 3926 aa10.04□□□□□ -0.8
SCN9A-205ENST00000454569 PIEZO2Q9H5I5 2752 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 PRRC2CQ9Y520 2896 aaKnown RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 SYT5O00445 386 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 SCDO00767 359 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 CYP7B1O75881 506 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 FABP3P05413 133 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 PSMD4P55036 377 aaKnown RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 SKP2Q13309 424 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 TUBA3CQ13748 450 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 LAPTM4AQ15012 233 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 TOMM34Q15785 309 aaPredicted RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 IRAK1BP1Q5VVH5 260 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 LPCAT4Q643R3 524 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 TUBA3EQ6PEY2 450 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 OPN5Q6U736 354 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 DEF8Q6ZN54 512 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 ERMP1Q7Z2K6 904 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 PIWIL3Q7Z3Z3 882 aaKnown RBP10.03□□□□□ -0.8
SCN9A-205ENST00000454569 HS3ST5Q8IZT8 346 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 TMEM156Q8N614 296 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 FAM71CQ8NEG0 241 aa10.03□□□□□ -0.8
SCN9A-205ENST00000454569 GEMIN6Q8WXD5 167 aaKnown RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms