RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 SCAMP2O15127 329 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 EIF4E2O60573 245 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 PRKD3O94806 890 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 AK1P00568 194 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 F12P00748 615 aaPredicted RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 SHBGP04278 402 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 HMGN2P05204 90 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 PSMB1P20618 241 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 FKBP2P26885 142 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 CCT3P49368 545 aaKnown RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 MMP16P51512 607 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 P2RX1P51575 399 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 PCLAFQ15004 111 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 P2RY6Q15077 328 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 DUSP5Q16690 384 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 PRSS53Q2L4Q9 553 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 EXOC3L2Q2M3D2 409 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 PLPPR5Q32ZL2 321 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 SPDYE7PQ495Y7 208 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 ARL13AQ5H913 290 aaPredicted RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 CDC73Q6P1J9 531 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 FIGNL1Q6PIW4 674 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 CLEC9AQ6UXN8 241 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 APOOLQ6UXV4 268 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 GGNQ86UU5 652 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 CXorf67Q86X51 503 aaPredicted RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 C4orf33Q8N1A6 199 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 BANPQ8N9N5 519 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 WFDC11Q8NEX6 87 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 VPS37AQ8NEZ2 397 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 TOR1AIP2Q8NFQ8 470 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 OR5M1Q8NGP8 315 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 OR10D3Q8NH80 312 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 PSMA8Q8TAA3 256 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 PHOSPHO1Q8TCT1 267 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 SFXN5Q8TD22 340 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 TMEM171Q8WVE6 324 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 TWIST2Q8WVJ9 160 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 OSTF1Q92882 214 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 CIDECQ96AQ7 238 aaPredicted RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 COQ8BQ96D53 544 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 APOPT1Q96IL0 206 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 MRGPRX4Q96LA9 322 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 RTN4RQ9BZR6 473 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 BHLHE41Q9C0J9 482 aaPredicted RBP6.34□□□□□ -1.39
VPS41-208ENST00000448833 CXorf56Q9H5V9 222 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 UBTD1Q9HAC8 227 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 SERINC1Q9NRX5 453 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 MED17Q9NVC6 651 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 FLRT3Q9NZU0 649 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 BAIAP2L1Q9UHR4 511 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 FIS1Q9Y3D6 152 aa6.34□□□□□ -1.39
VPS41-208ENST00000448833 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 B4DXG7 233 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 H0YC42 278 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 TNFSF11O14788 317 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PIP5K1BO14986 540 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 CFLARO15519 480 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ZNF264O43296 627 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 CXCL13O43927 109 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 GMFGO60234 142 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PEX11AO75192 247 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 AQP8O94778 261 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 CNOT4O95628 575 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 IGKV1D-16P01601 117 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 HEXAP06865 529 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 YES1P07947 543 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 NUDT17P0C025 328 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 LINGO3P0C6S8 592 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ACP2P11117 423 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PAX1P15863 534 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 HOXB4P17483 251 aaPredicted RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 PSMA4P25789 261 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 SLC7A1P30825 629 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ALDH3A1P30838 453 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ATP12AP54707 1039 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 TPD52P55327 224 aaPredicted RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 LTBQ06643 244 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 CBFBQ13951 182 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ETFDHQ16134 617 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 UGT3A2Q3SY77 523 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 KLHL26Q53HC5 615 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 Q5PR19 223 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ANKRD26P1Q6NSI1 321 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PLXDC2Q6UX71 529 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 STAC2Q6ZMT1 411 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 ZNF611Q8N823 705 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 FNDC5Q8NAU1 212 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 OR2T11Q8NH01 316 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 PPP1R14CQ8TAE6 165 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 EPS8L3Q8TE67 593 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 TMEM234Q8WY98 164 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 HSD17B8Q92506 261 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 CDS1Q92903 461 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 GTPBP3Q969Y2 492 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 FAM120BQ96EK7 910 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 GIMAP5Q96F15 307 aa6.33□□□□□ -1.4
VPS41-208ENST00000448833 TRMT61AQ96FX7 289 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 ZC3HAV1LQ96H79 300 aaKnown RBP6.33□□□□□ -1.4
VPS41-208ENST00000448833 SH3YL1Q96HL8 342 aaPredicted RBP6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms