RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 KLHL26Q53HC5 615 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 COQ5Q5HYK3 327 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 PAGE3Q5JUK9 113 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 DCST1Q5T197 706 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 NSUN5P2Q63ZY6 315 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 SP5Q6BEB4 398 aaPredicted RBP14.83□□□□□ -0.04
SF3A1-204ENST00000447376 RTL6Q6ICC9 239 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 MTDHQ86UE4 582 aaKnown RBP14.83□□□□□ -0.04
SF3A1-204ENST00000447376 CCDC71Q8IV32 467 aaPredicted RBP14.83□□□□□ -0.04
SF3A1-204ENST00000447376 UBQLNLQ8IYU4 475 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 DPP10Q8N608 796 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 PCYOX1LQ8NBM8 494 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 TOR1AIP2Q8NFQ8 470 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 LILRB4Q8NHJ6 448 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 PNPT1Q8TCS8 783 aaKnown RBP14.83□□□□□ -0.04
SF3A1-204ENST00000447376 RAB8BQ92930 207 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 ROPN1LQ96C74 230 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 RTN4RQ9BZR6 473 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF350Q9GZX5 532 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 SERHL2Q9H4I8 314 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 ADAM21Q9UKJ8 722 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 MKLN1Q9UL63 735 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 ARL2BPQ9Y2Y0 163 aa14.83□□□□□ -0.04
SF3A1-204ENST00000447376 NUP214P35658 2090 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NPIPA5A0A0B4J1W7 369 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 CD8B2A6NJW9 211 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 FAM90A27PA6NNH2 459 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NPIPA7E9PJI5 369 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 HMGN4O00479 90 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 EIF4E2O60573 245 aaKnown RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NPPAP01160 153 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 GUSBP08236 651 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NPIPA8P0DM63 369 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NR2F1P10589 423 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 UBL4AP11441 157 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 COX6B1P14854 86 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF708P17019 499 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 TIMP3P35625 211 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 EIF1P41567 113 aaKnown RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 STARP49675 285 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 LHX2P50458 406 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 P2RX1P51575 399 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 CCR4P51679 360 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 NFYCQ13952 458 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 CYLC2Q14093 348 aaPredicted RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 SLC25A35Q3KQZ1 300 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 PDZK1Q5T2W1 519 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 HEPHL1Q6MZM0 1159 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 EIF3MQ7L2H7 374 aaKnown RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 P4HA3Q7Z4N8 544 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 DHDDSQ86SQ9 333 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 ZFP3Q96NJ6 502 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 TRNT1Q96Q11 434 aaKnown RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 TM9SF2Q99805 663 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 SLC6A13Q9NSD5 602 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 CALML5Q9NZT1 146 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 P2RX2Q9UBL9 471 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 AP4B1Q9Y6B7 739 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 ICE1Q9Y2F5 2266 aa14.82□□□□□ -0.04
SF3A1-204ENST00000447376 PHF3Q92576 2039 aaKnown RBP14.82□□□□□ -0.04
SF3A1-204ENST00000447376 FREM3P0C091 2139 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 A0A0G2JNJ9 132 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 OR2M5A3KFT3 312 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 C17orf51A8MQB3 221 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF264O43296 627 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 SEC14L5O43304 696 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 HNRNPRO43390 633 aaKnown RBP14.81□□□□□ -0.04
SF3A1-204ENST00000447376 KIAA0513O60268 411 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CYP7B1O75881 506 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CSTAP01040 98 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 COL8A1P27658 744 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 DSTNP60981 165 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF117Q03924 483 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CBFBQ13951 182 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CD226Q15762 336 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF141Q15928 474 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 GTDC1Q4AE62 458 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 PDSS1Q5T2R2 415 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 GKAP1Q5VSY0 366 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ARSKQ6UWY0 536 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 PIGWQ7Z7B1 504 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 SNX32Q86XE0 403 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 GRAMD2AQ8IUY3 354 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF619Q8N2I2 560 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 RP9Q8TA86 221 aaKnown RBP14.81□□□□□ -0.04
SF3A1-204ENST00000447376 SMPDL3BQ92485 455 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 PMM1Q92871 262 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 AURKBQ96GD4 344 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CCT8L2Q96SF2 557 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 TUBA1CQ9BQE3 449 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 GID8Q9NWU2 228 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ARMCX1Q9P291 453 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 Q9UFV3 132 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 SLC35A3Q9Y2D2 325 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 CARD8Q9Y2G2 431 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 ZNF337Q9Y3M9 751 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 GMEB1Q9Y692 573 aa14.81□□□□□ -0.04
SF3A1-204ENST00000447376 NCOA6Q14686 2063 aaPredicted RBP14.81□□□□□ -0.04
SF3A1-204ENST00000447376 LOC100653049A0A140TA62 436 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms