RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 CHST10O43529 356 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PLIN3O60664 434 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SEC14L2O76054 403 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SIX3O95343 332 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 BMP10O95393 424 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CLDN9O95484 217 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OTCP00480 354 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 HEXBP07686 556 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 UMODP07911 640 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RPS17P08708 135 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PRKAR1AP10644 381 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CPA3P15088 417 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 IL1RNP18510 177 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CD22P20273 847 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 EEF1DP29692 281 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OTX2P32243 289 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CPOXP36551 454 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CENPAP49450 140 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RASSF2P50749 326 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZP1P60852 638 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RPS18P62269 152 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 HERVK_113P63132 956 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PHEXP78562 749 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ROR2Q01974 943 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 KLC1Q07866 573 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ASPHQ12797 758 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RCN2Q14257 317 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 RBBP7Q16576 425 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 DEFB134Q4QY38 66 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 UNC50Q53HI1 259 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SOWAHCQ53LP3 525 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 FBXO48Q5FWF7 155 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 VWA2Q5GFL6 755 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SERTAD4-AS1Q5TG53 156 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CFAP161Q6P656 301 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 TMEM205Q6UW68 189 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 GOLGA7Q7Z5G4 137 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PXKQ7Z7A4 578 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 HPS6Q86YV9 775 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZDHHC23Q8IYP9 409 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 AMER3Q8N944 861 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PLPP5Q8NEB5 264 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OR2L5Q8NG80 312 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OR7G3Q8NG95 312 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OR9A4Q8NGU2 314 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OR51Q1Q8NH59 317 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PPP4R1Q8TF05 950 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF473Q8WTR7 871 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZDHHC19Q8WVZ1 309 aaPredicted RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MS4A6EQ96DS6 147 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PHF21BQ96EK2 531 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 L3HYPDHQ96EM0 354 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CMTM7Q96FZ5 175 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 KLHL15Q96M94 604 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 QRFPRQ96P65 431 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 OR1F2PQ96R84 312 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 CENPKQ9BS16 269 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ERVK-6Q9BXR3 956 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 MUC13Q9H3R2 512 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 NOL11Q9H8H0 719 aaKnown RBP2.3□□□□□ -2.04
VPS13A-208ENST00000423463 KRT84Q9NSB2 600 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SNTG1Q9NSN8 517 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 C20orf141Q9NUB4 165 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 P4HTMQ9NXG6 502 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SENP1Q9P0U3 644 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 C3orf18Q9UK00 162 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 PCTPQ9UKL6 214 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 NAALAD2Q9Y3Q0 740 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 WDR87Q6ZQQ6 2873 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 ZNF462Q96JM2 2506 aa2.3□□□□□ -2.04
VPS13A-208ENST00000423463 SEC16AO15027 2179 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 LOC102723996A0A087X1L8 192 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 A0A1W2PQ72 361 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SYNDIG1LA6NDD5 238 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ARGFXA6NJG6 315 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 EIF4E1BA6NMX2 242 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PRSS47A8MTI9 375 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 IDSB3KWA1 339 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 FAM157AC9JC47 383 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MS4A18H0YCH9 400 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SGK494L7N484 410 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 EBAG9O00559 213 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 OR7A17O14581 309 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RGS16O15492 202 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ERI3O43414 337 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SPRY3O43610 288 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ALOX12BO75342 701 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CEACAM4O75871 244 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SUPT7LO94864 414 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 SCELO95171 688 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MLYCDO95822 493 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 HPP00738 406 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 STATHP02808 62 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 HEXAP06865 529 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 MYL2P10916 166 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 PCNAP12004 261 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 RNH1P13489 461 aaKnown RBP2.29□□□□□ -2.04
VPS13A-208ENST00000423463 ICAM2P13598 275 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 JAK1P23458 1154 aa2.29□□□□□ -2.04
VPS13A-208ENST00000423463 CCKARP32238 428 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms