RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SLC1A3P43003 542 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SLC35G1Q2M3R5 365 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ACSBG2Q5FVE4 666 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 METTL2BQ6P1Q9 378 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PDZD9Q8IXQ8 264 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PLD6Q8N2A8 252 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FAM83FQ8NEG4 500 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 GPR148Q8TDV2 347 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 APOOQ9BUR5 198 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SAMD10Q9BYL1 202 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 KCNIP2Q9NS61 270 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PCDHA9Q9Y5H5 950 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 HSPE1-MOB4S4R3N1 261 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF736B4DX44 427 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PTGIRP43119 386 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 HBG1P69891 147 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 HBG2P69892 147 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ERMP1Q7Z2K6 904 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 DCUN1D4Q92564 292 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 LRR1Q96L50 414 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 INTS14Q96SY0 518 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ACSS1Q9NUB1 689 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TESQ9UGI8 421 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PLEKHM1Q9Y4G2 1056 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PSAT1Q9Y617 370 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 LRP5LA4QPB2 252 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 BEST1O76090 585 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TCN2P20062 427 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 HOXC13P31276 330 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SNCAP37840 140 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SUB1P53999 127 aaKnown RBP eCLIP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 RNF220Q5VTB9 566 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 C5orf46Q6UWT4 87 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 HAS2Q92819 552 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SLCO2A1Q92959 643 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ANKRD9Q96BM1 317 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FGGYQ96C11 551 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 INTS12Q96CB8 462 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 IMP4Q96G21 291 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM246Q9BRR3 403 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ARL6Q9H0F7 186 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 NIPAL2Q9H841 368 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PCYT1BQ9Y5K3 369 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 MTCL1Q9Y4B5 1905 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TCRBV7S2A1N4TA0A589 114 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 C2orf78A6NCI8 922 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF840PA6NDX5 716 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ANHXE9PGG2 379 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 GAAP10253 952 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ANXA7P20073 488 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TBPP20226 339 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 BCKDHBP21953 392 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 IDUAP35475 653 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SOX3P41225 446 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CD97P48960 835 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 GDF10P55107 478 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 DCDP81605 110 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TBC1D28Q2M2D7 210 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TMEM244Q5VVB8 128 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 WBP2NLQ6ICG8 309 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FAM160A2Q8N612 972 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FNDC8Q8TC99 324 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CIDECQ96AQ7 238 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TOE1Q96GM8 510 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 FAM71F1Q96KD3 344 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 F2RL3Q96RI0 385 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 OCSTAMPQ9BR26 566 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TM7SF3Q9NS93 570 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 OR14J1Q9UGF5 321 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SSUH2Q9Y2M2 353 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 LSM5Q9Y4Y9 91 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 LTBP3Q9NS15 1303 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 BCAT2O15382 392 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 P2RX6O15547 441 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CTSAP10619 480 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SELEP16581 610 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 GKP32189 559 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SGSHP51688 502 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ATP6AP1Q15904 470 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 DEFB133Q30KQ1 61 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ACTBL2Q562R1 376 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 OR7G2Q8NG99 324 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF75AQ96N20 296 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 IP6K3Q96PC2 410 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 SIDT1Q9NXL6 827 aaKnown RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 ANKMY1Q9P2S6 941 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 NDRG3Q9UGV2 375 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 TRIP12Q14669 1992 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-204ENST00000423058 PHIPQ8WWQ0 1821 aa6.47□□□□□ -1.37
SCN1A-204ENST00000423058 CDC14CA4D256 554 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 C1orf196B1AJZ1 125 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SULT1C2O00338 296 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 GOSR2O14653 212 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 EDN1P05305 212 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 RAD52P43351 418 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 RPS23P62266 143 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 SLC25A11Q02978 314 aaKnown RBP6.46□□□□□ -1.37
SCN1A-204ENST00000423058 METTL11BQ5VVY1 283 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 C22orf42Q6IC83 251 aa6.46□□□□□ -1.37
SCN1A-204ENST00000423058 NANOGP8Q6NSW7 305 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms